View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_215 (Length: 276)
Name: NF9839A_low_215
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_215 |
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| [»] chr7 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 12 - 276
Target Start/End: Complemental strand, 32886739 - 32886475
Alignment:
| Q |
12 |
aatattattcatctcttaggtgttgtggaaattatggggcacattaagtatcttggcctcccatctatggtaggaagagacaaacaatcaatattcactt |
111 |
Q |
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| T |
32886739 |
aatattattcatctcttaggtgttgtggaaattatggggcacattaagtatcttggcctcccatctatggtaggaagagacaaacaatcaatattcactt |
32886640 |
T |
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| Q |
112 |
ttatcaaagagcgtatctgaaaaaatatccaaaattggaatgctcgatttctttcacgtacaagtaaggaagtgctcctaaagtcaattgctcaatctat |
211 |
Q |
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| T |
32886639 |
ttatcaaagagtgtatctgaaaaaatatccaaaattggaatgctcgatttctttcacgtgcaagtaaggaagtgctcctaaagtcaattgctcaatatat |
32886540 |
T |
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| Q |
212 |
acctacttattgtatgagtgattttctgctccctacctcatttgggtaataaataaagcgcatga |
276 |
Q |
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| T |
32886539 |
acctacttattgtatgagtgattttctgctccctacgtcatttgggtaataaataaagcgcatga |
32886475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 57 - 250
Target Start/End: Original strand, 23672283 - 23672475
Alignment:
| Q |
57 |
aagtatcttggcctcccatctatggtaggaagagacaaacaatcaatattcacttttatcaaagagcgtatctgaaaaaatatccaaaattggaatgctc |
156 |
Q |
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| T |
23672283 |
aagtatcttggtctcccatctatggtagaaagagacaaaaaatcaatattctcgtttatcaaagaacgcatctggaaaaatattcagaattggagtgctt |
23672382 |
T |
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| Q |
157 |
gatttctttcacgtacaagtaaggaagtgctcctaaagtcaattgctcaatctatacctacttattgtatgagtgattttctgctccctacctc |
250 |
Q |
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| T |
23672383 |
ggtctctttcacgtgcaggtaaggaagtgcttttaaaatccattgcccaatatatccctacttatt-catgggcgattttctgctccctacctc |
23672475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 12 - 276
Target Start/End: Complemental strand, 52843689 - 52843425
Alignment:
| Q |
12 |
aatattattcatctcttaggtgttgtggaaattatggggcacattaagtatcttggcctcccatctatggtaggaagagacaaacaatcaatattcactt |
111 |
Q |
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| T |
52843689 |
aatattattcatcttttaggtgttgtggaaatgatgggacacagtaagtatcttggcctcccatctatggtaggaagagacaaaaaatcaatattcactt |
52843590 |
T |
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| Q |
112 |
ttatcaaagagcgtatctgaaaaaatatccaaaattggaatgctcgatttctttcacgtacaagtaaggaagtgctcctaaagtcaattgctcaatctat |
211 |
Q |
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| T |
52843589 |
ttatcaaagaacatatctggaaaaatatccaaaattggaatactcgatctctttctcgtgcaggtaaggaagtgctcctaaagtccattgctcaatctat |
52843490 |
T |
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| Q |
212 |
acctacttattgtatgagtgattttctgctccctacctcatttgggtaataaataaagcgcatga |
276 |
Q |
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| T |
52843489 |
acctacttactgtatgagcgcttttctcctccctacctcatttggggaagaaatagagcgcatga |
52843425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 132 - 249
Target Start/End: Original strand, 2901291 - 2901408
Alignment:
| Q |
132 |
aaaaatatccaaaattggaatgctcgatttctttcacgtacaagtaaggaagtgctcctaaagtcaattgctcaatctatacctacttattgtatgagtg |
231 |
Q |
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| T |
2901291 |
aaaaacatccaaaattggaatgctcgatctctttcacgtacaggtaaagaagtgcttctaaaatcaatagtccaatctattcccacttattatatgagtg |
2901390 |
T |
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| Q |
232 |
attttctgctccctacct |
249 |
Q |
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| T |
2901391 |
cttttcttctccctacct |
2901408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 12 - 170
Target Start/End: Original strand, 1361744 - 1361902
Alignment:
| Q |
12 |
aatattattcatctcttaggtgttgtggaaattatggggcacattaagtatcttggcctcccatctatggtaggaagagacaaacaatcaatattcactt |
111 |
Q |
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||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| || | |||||||||| |
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| T |
1361744 |
aatattattcatctcttagatgttgtggaaatgatggggcacggtaagtatcttggcctcccatctatggtaggaagagacaaaaaagctatattcactt |
1361843 |
T |
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| Q |
112 |
ttatcaaagagcgtatctgaaaaaatatccaaaattggaatgctcgatttctttcacgt |
170 |
Q |
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| T |
1361844 |
ttatcaaagaacgtatctggaaaaatatccaaaattggaatgctcgatctctttcacgt |
1361902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 199 - 276
Target Start/End: Original strand, 1361912 - 1361989
Alignment:
| Q |
199 |
ttgctcaatctatacctacttattgtatgagtgattttctgctccctacctcatttgggtaataaataaagcgcatga |
276 |
Q |
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| T |
1361912 |
ttgcccaatctataccaacttactgtatgagcgcttttctgctccctacctcatttagggaagaaatagagcgcatga |
1361989 |
T |
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