View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_216 (Length: 276)
Name: NF9839A_low_216
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_216 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 28 - 276
Target Start/End: Complemental strand, 7296347 - 7296096
Alignment:
| Q |
28 |
aaagacatatagttaatacttgactcattaaccgaggagaagtattagggaaattcgacctaaatataaacaacaacaacac---tcacctaaaataaca |
124 |
Q |
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| T |
7296347 |
aaagaaatatagttaatacttgactcatcaactgaggagaagtatcaaggatattcgacctaaatataaacaacaacaacaacaatcacctaaaataaca |
7296248 |
T |
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| Q |
125 |
tataaaggaaggggttcgaaaagtactcgtaatacaaacatgaaccaccttcgtagaattttctattttgtgacattttgttgaagatgattttagaaag |
224 |
Q |
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| T |
7296247 |
tataaaggaaggggttcgaaaagcactcgtaatacaaacatgaaccaccttcgtagaattttctattttttgacattttgttgaagatgattttagaaag |
7296148 |
T |
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| Q |
225 |
agaggttaaatttgtggcctattatagggttgccgttgtttgtttgcggtgt |
276 |
Q |
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| T |
7296147 |
agaggttaaatttgtggcctattatagggttgccgttgtttgtttgtggtgt |
7296096 |
T |
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