View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_22 (Length: 443)
Name: NF9839A_low_22
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 28613984 - 28613739
Alignment:
| Q |
19 |
acatcaatctccaatctctcatacaccaccctctctcccccaactatccatactcttcatcaaccacagcttgttcataggcgacagagccgctaccaca |
118 |
Q |
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| T |
28613984 |
acatcaatctccaatctctcatacaccaccctctctcccccaactatccatactcttcatcaaccacagcttgttcataggcgacagagccgctaccaca |
28613885 |
T |
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| Q |
119 |
ttgtcatcgcagactacgattttcaacaagatcaaactgaagttccttcatttgccaatttaccaatatgatatagatggaagaaaggtatgttactgtg |
218 |
Q |
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| T |
28613884 |
ttgtcatcgcagactacgattttcaacaagatcaaactgaagttccttcatttgccaatttaccaatatgatatagatggaagaaaggtatgttactgtt |
28613785 |
T |
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| Q |
219 |
tctacttgttataatcacatgtgcttttttgattaaatcaatcatc |
264 |
Q |
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| T |
28613784 |
tctacttgttataatcacatgtgcttttttgattaaatcaatcatc |
28613739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 269 - 443
Target Start/End: Complemental strand, 28613708 - 28613538
Alignment:
| Q |
269 |
tgtgaatgttactttacaaacatagtgcacctatgatgcatatatagaataaattttattaatgtatctagattgtgtcgtattttgattttagataact |
368 |
Q |
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| T |
28613708 |
tgtgaatgttactttacaaacatagtgctcctatgatgcatatatagaataaattttattaatgtatctagattgtgtcgtattttgattt----taact |
28613613 |
T |
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| Q |
369 |
gcacgtatctccatatttgtgtcttatgatttctaaattgttgaacagaaaaatatataagcttgtactaaagat |
443 |
Q |
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| T |
28613612 |
gcacgtatctccatatttgtgtcttatgatttctaaattgttgaacagaaaaatatataagcttgtactaaagat |
28613538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 300 - 359
Target Start/End: Complemental strand, 28657947 - 28657888
Alignment:
| Q |
300 |
tatgatgcatatatagaataaattttattaatgtatctagattgtgtcgtattttgattt |
359 |
Q |
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| T |
28657947 |
tatgattcatatatagaatgaattttgctaatgtatcttgattgtgtcatattttgattt |
28657888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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