View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9839A_low_221 (Length: 273)
Name: NF9839A_low_221
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_221 |
 | |
|
| [»] chr3 (29 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 29)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 9838757 - 9839012
Alignment:
| Q |
18 |
acaaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9838757 |
acaaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaac |
9838856 |
T |
|
| Q |
118 |
taccctcgcccaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagta |
217 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9838857 |
tacccttgcccaacttgtttacaatgatgaagaagttcaacaacattttgatatgagggcgtgggcttgtgtgtctgaggattttgatattttgagagta |
9838956 |
T |
|
| Q |
218 |
accaagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttga |
273 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
9838957 |
accaagtctctccttgaatcggtcacttccataacatgggatagcaataatcttga |
9839012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 9849635 - 9849890
Alignment:
| Q |
18 |
acaaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9849635 |
acaaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaac |
9849734 |
T |
|
| Q |
118 |
taccctcgcccaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagta |
217 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9849735 |
tacccttgcccaacttgtttacaatgatgaagaagttcaacaacattttgatatgagggcgtgggcttgtgtgtctgaggattttgatattttgagagta |
9849834 |
T |
|
| Q |
218 |
accaagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttga |
273 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
9849835 |
accaagtctctccttgaatcggtcacttccataacatgggatagcaataatcttga |
9849890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 273
Target Start/End: Complemental strand, 10376016 - 10375763
Alignment:
| Q |
20 |
aaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaacta |
119 |
Q |
| |
|
||||| || |||||||||||||||||||| | | ||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10376016 |
aaagacactataatgaacatgttgctatcagagacagacacatcgcataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaacta |
10375917 |
T |
|
| Q |
120 |
ccctcgcccaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaac |
219 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10375916 |
cccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaac |
10375817 |
T |
|
| Q |
220 |
caagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttga |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10375816 |
caagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttga |
10375763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 10126824 - 10127079
Alignment:
| Q |
18 |
acaaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10126824 |
acaaagagacaataatgaacatgttgctatctcagagagacacatcccataataatataggtgttgttgcaattttgggcatgggaggtttgggaaaaac |
10126923 |
T |
|
| Q |
118 |
taccctcgcccaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagta |
217 |
Q |
| |
|
|||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
10126924 |
tacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcatgggtttgtgtgtctgaggattttgatattatgagagta |
10127023 |
T |
|
| Q |
218 |
accaagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttga |
273 |
Q |
| |
|
|| ||||||||||||||||| |||||||| | ||| |||||||||||||||||||| |
|
|
| T |
10127024 |
acaaagtctctccttgaatctgtcacttccacaacttgggatagcaataatcttga |
10127079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 11769130 - 11769385
Alignment:
| Q |
18 |
acaaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11769130 |
acaaagagacaataatgaacatgttgctatcacagagagacacaatccataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaac |
11769229 |
T |
|
| Q |
118 |
taccctcgcccaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagta |
217 |
Q |
| |
|
|||||| || |||||||| ||||||||| || ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
11769230 |
tacccttgctcaacttgtctacaatgataaagaagttcaacaatattttgatttgaaggcatgggcttgcgtgtctgaggattttgatattatgagagta |
11769329 |
T |
|
| Q |
218 |
accaagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttga |
273 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11769330 |
accaggtctctccttgaatcggtcacttcaagaacttgggatagcaataatcttga |
11769385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 10663422 - 10663677
Alignment:
| Q |
18 |
acaaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10663422 |
acaaagagacaataatgaacatgttgctatcacagagagacacaacccataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaac |
10663521 |
T |
|
| Q |
118 |
taccctcgcccaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagta |
217 |
Q |
| |
|
|||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
10663522 |
tacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcatgggtttgtgtgtctgaggattttgatattatgagagta |
10663621 |
T |
|
| Q |
218 |
accaagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttga |
273 |
Q |
| |
|
|| ||||||||||||||||| |||||||| | ||| ||||||||||| ||||||| |
|
|
| T |
10663622 |
acaaagtctctccttgaatctgtcacttccacaacttgggatagcaaagatcttga |
10663677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 10434217 - 10433962
Alignment:
| Q |
18 |
acaaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||| ||||||| ||||| || |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10434217 |
acaaagagacaataatgaacatgttgctatcacagagaaacacaactcataataagataggtgttgttgcaattttaggcatgggaggtttaggaaaaac |
10434118 |
T |
|
| Q |
118 |
taccctcgcccaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagta |
217 |
Q |
| |
|
|||||| ||||||||||||||||||||| || |||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
10434117 |
tacccttgcccaacttgtttacaatgataaagaagttcaacaccattttgatttgaaggcctgggcttgtgtgtctcaggattttgatattttgaaagta |
10434018 |
T |
|
| Q |
218 |
accaagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttga |
273 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
10434017 |
accaagtctctccttgaatcggtcacttccagaacttgggatagcaataatcttga |
10433962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 10031899 - 10032154
Alignment:
| Q |
18 |
acaaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10031899 |
acaaagagacaataatgaacatgttgctatcacagagagacgcatcccataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaac |
10031998 |
T |
|
| Q |
118 |
taccctcgcccaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagta |
217 |
Q |
| |
|
|||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10031999 |
tacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcctgggcttgtgtgtctgaggattttgatattatgagagta |
10032098 |
T |
|
| Q |
218 |
accaagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttga |
273 |
Q |
| |
|
|| ||||||||||||||||| |||||||| | ||| | ||||||||| ||||||| |
|
|
| T |
10032099 |
acaaagtctctccttgaatctgtcacttccacaacttcggatagcaaagatcttga |
10032154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 10184138 - 10184393
Alignment:
| Q |
18 |
acaaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| || || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10184138 |
acaaagagacaataatgaacatgttgctgtcacagagagacacaacccataatgctataggtgttgttgcaattttgggcatgggaggtttaggaaaaac |
10184237 |
T |
|
| Q |
118 |
taccctcgcccaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagta |
217 |
Q |
| |
|
|||||| || |||||||||||||||||| || |||||||||||||||||||| ||| ||| |||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
10184238 |
tacccttgctcaacttgtttacaatgataaagaagttcaacaacattttgatatgagggcgtgggcttgtgtgtccgaggattttgatattatgagagta |
10184337 |
T |
|
| Q |
218 |
accaagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttga |
273 |
Q |
| |
|
|||||||||||||||||||| |||||||| | ||| |||||||||||||||||||| |
|
|
| T |
10184338 |
accaagtctctccttgaatctgtcacttccacaacttgggatagcaataatcttga |
10184393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 10260594 - 10260849
Alignment:
| Q |
18 |
acaaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||| |||||| | || ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10260594 |
acaaagagacaataatgaacatgttgctatcacagagagaaacaaccaacaataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaac |
10260693 |
T |
|
| Q |
118 |
taccctcgcccaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagta |
217 |
Q |
| |
|
|||||| || |||||||||||||||||| || ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10260694 |
tacccttgctcaacttgtttacaatgataaagaagttcaacaacattttgacatgaaggcgtgggcttgtgtgtctgaggattttgatattatgagagta |
10260793 |
T |
|
| Q |
218 |
accaagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttga |
273 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||| ||||||| |||||||||||| |
|
|
| T |
10260794 |
accaagtctctccttgaatcagtcacttctagaaattgggatatcaataatcttga |
10260849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 10580497 - 10580752
Alignment:
| Q |
18 |
acaaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10580497 |
acaaagagacaataatgaacatgttgctatcacagagaaacacaatccataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaac |
10580596 |
T |
|
| Q |
118 |
taccctcgcccaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagta |
217 |
Q |
| |
|
|||||| ||||||||||||||||||||| || ||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
10580597 |
tacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgacatgaaggcgtgggtttgtgtgtctgaggattttgatattatgagagta |
10580696 |
T |
|
| Q |
218 |
accaagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttga |
273 |
Q |
| |
|
|| ||||||||||||||||| |||||||| | ||| | ||| |||||||||||||| |
|
|
| T |
10580697 |
acaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttga |
10580752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 20 - 272
Target Start/End: Original strand, 10088688 - 10088940
Alignment:
| Q |
20 |
aaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaacta |
119 |
Q |
| |
|
|||||||||||||||||||||||||| || | ||||| |||||| | || ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10088688 |
aaagagacaataatgaacatgttgctttcaaagagagaaacaaccgacaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaacta |
10088787 |
T |
|
| Q |
120 |
ccctcgcccaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaac |
219 |
Q |
| |
|
|||| ||||||||||||||||||||| || |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10088788 |
cccttgcccaacttgtttacaatgataaagaagttcaacaccattttgatttgaaggcatgggtttgtgtgtctgaggattttgatattatgagagtaac |
10088887 |
T |
|
| Q |
220 |
caagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttg |
272 |
Q |
| |
|
||||||||||||||||| |||||||| | ||| | |||||||||| |||||| |
|
|
| T |
10088888 |
aaagtctctccttgaatctgtcacttcgacaacttcggatagcaatgatcttg |
10088940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 20 - 272
Target Start/End: Original strand, 10195571 - 10195823
Alignment:
| Q |
20 |
aaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaacta |
119 |
Q |
| |
|
|||||||||||||||||||||||||| || | ||||| |||||| | || ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10195571 |
aaagagacaataatgaacatgttgctttcaaagagagaaacaaccgacaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaacta |
10195670 |
T |
|
| Q |
120 |
ccctcgcccaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaac |
219 |
Q |
| |
|
|||| ||||||||||||||||||||| || |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10195671 |
cccttgcccaacttgtttacaatgataaagaagttcaacaccattttgatttgaaggcatgggtttgtgtgtctgaggattttgatattatgagagtaac |
10195770 |
T |
|
| Q |
220 |
caagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttg |
272 |
Q |
| |
|
||||||||||||||||| |||||||| | ||| | |||||||||| |||||| |
|
|
| T |
10195771 |
aaagtctctccttgaatctgtcacttcgacaacttcggatagcaatgatcttg |
10195823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 10363971 - 10363716
Alignment:
| Q |
18 |
acaaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| || | ||||| |||||| | || ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10363971 |
acaaagagacaataatgaacatgttgctttcaaagagagaaacaaccgacaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaac |
10363872 |
T |
|
| Q |
118 |
taccctcgcccaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagta |
217 |
Q |
| |
|
|||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||| |
|
|
| T |
10363871 |
tacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcatgggtttgtgtctctgaggattttgatattatgagagta |
10363772 |
T |
|
| Q |
218 |
accaagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttga |
273 |
Q |
| |
|
|| ||||||||||||||||| | |||||| | ||| | ||| |||||||||||||| |
|
|
| T |
10363771 |
acaaagtctctccttgaatctgccacttccataacttcggaaagcaataatcttga |
10363716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 10077165 - 10077420
Alignment:
| Q |
18 |
acaaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| | | | ||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10077165 |
acaaagagacaataatgaacatgttgctatcagggatgggcggaacccataataagataggtgttgttgcaattttgggcatgggaggtttaggaaaaac |
10077264 |
T |
|
| Q |
118 |
taccctcgcccaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagta |
217 |
Q |
| |
|
|||||| ||||||||||||||||||||| | ||||||| | | |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10077265 |
tacccttgcccaacttgtttacaatgattataaagttcgataccattttgatttgcaggcatgggcttgtgtgtctgaggattttgatattatgagagta |
10077364 |
T |
|
| Q |
218 |
accaagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttga |
273 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||| ||||||| |||| ||||||| |
|
|
| T |
10077365 |
accaagtctctccttgaatcgatcacttctagaacttgggataacaatgatcttga |
10077420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 11131199 - 11130944
Alignment:
| Q |
18 |
acaaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaac |
117 |
Q |
| |
|
||||||||||||||| ||||||||||||||| | || ||| | | |||||||||| ||||||||||||||||| || ||||||||| | |||||||| |
|
|
| T |
11131199 |
acaaagagacaataacgaacatgttgctatcaaagagcagcactagcaataacaatatcggtgttgttgcaattttaggtatgggaggtgtcggaaaaac |
11131100 |
T |
|
| Q |
118 |
taccctcgcccaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagta |
217 |
Q |
| |
|
||||| || ||| ||| |||||||||||||||||||||| |||| |||||| | || |||||||||||||| || ||||||||||||||||| |||||| |
|
|
| T |
11131099 |
aacccttgcacaaattgcttacaatgatgaaaaagttcaagaacactttgatctcaaagcatgggcttgtgtatcggaggattttgatattttaagagta |
11131000 |
T |
|
| Q |
218 |
accaagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttga |
273 |
Q |
| |
|
|| || ||||||||||||| ||||||||||| | ||||| | |||||||||||| |
|
|
| T |
11130999 |
actaaaactctccttgaatctgtcacttcaagggcttgggaaaacaataatcttga |
11130944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 11149027 - 11148772
Alignment:
| Q |
18 |
acaaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaac |
117 |
Q |
| |
|
||||||||| ||||| ||||||||||||||| | || ||| | | |||||||||| ||||||||||||||||| || ||||||||| | |||||||| |
|
|
| T |
11149027 |
acaaagagataataacgaacatgttgctatcaaagagcagcactagcaataacaatatcggtgttgttgcaattttaggtatgggaggtgtcggaaaaac |
11148928 |
T |
|
| Q |
118 |
taccctcgcccaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagta |
217 |
Q |
| |
|
||||| || ||| ||| |||||||||||||||||||||| |||| |||||| | || |||||||||||||| || ||||||||||||||||| |||||| |
|
|
| T |
11148927 |
aacccttgcacaaattgcttacaatgatgaaaaagttcaagaacactttgatctcaaagcatgggcttgtgtatcggaggattttgatattttaagagta |
11148828 |
T |
|
| Q |
218 |
accaagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttga |
273 |
Q |
| |
|
|| || ||||||||||||| ||||||||||| | ||||| | |||||||||||| |
|
|
| T |
11148827 |
actaaaactctccttgaatctgtcacttcaagggcttgggaaaacaataatcttga |
11148772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 20 - 273
Target Start/End: Complemental strand, 11160188 - 11159935
Alignment:
| Q |
20 |
aaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaacta |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| | || ||| | ||||||||||||| |||||||||||||| || ||||||||| | || ||||| | |
|
|
| T |
11160188 |
aaagagacaataatgaacatgttgctatcagagagtagcactggcaataacaatataggcgttgttgcaattttaggtatgggaggtgtcggtaaaacga |
11160089 |
T |
|
| Q |
120 |
ccctcgcccaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaac |
219 |
Q |
| |
|
| || || ||||||||||||||| |||||||||||||| | ||||||||||| || |||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
11160088 |
cacttgcacaacttgtttacaataatgaaaaagttcaagatcattttgatttcaaagcatgggcttgtgtatctgaggattttgatattttatctgtaac |
11159989 |
T |
|
| Q |
220 |
caagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttga |
273 |
Q |
| |
|
|| |||| |||||||| |||||||||||| | ||||| | |||||||||||| |
|
|
| T |
11159988 |
taaaactcttcttgaatctgtcacttcaagagcttgggaaaccaataatcttga |
11159935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 20 - 270
Target Start/End: Original strand, 10889204 - 10889454
Alignment:
| Q |
20 |
aaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaacta |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| | || ||| | |||||||||| ||||||||||||||||| || ||||||||| | || ||||| | |
|
|
| T |
10889204 |
aaagagacaataatgaacatgttgctatcagagagcagcactaggaataacaatatcggtgttgttgcaattttaggtatgggaggtgtcggtaaaacga |
10889303 |
T |
|
| Q |
120 |
ccctcgcccaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaac |
219 |
Q |
| |
|
| || || |||||||||||||||||||||||||||||| | || |||||| | || |||||||||||||| |||||||||||||||||||| | ||||| |
|
|
| T |
10889304 |
cacttgcacaacttgtttacaatgatgaaaaagttcaagagcactttgatctcaaagcatgggcttgtgtatctgaggattttgatattttaactgtaac |
10889403 |
T |
|
| Q |
220 |
caagtctctccttgaatcggtcacttcaagaacatgggatagcaataatct |
270 |
Q |
| |
|
|| |||| |||||||| || ||||||||| | ||||| | ||||||||| |
|
|
| T |
10889404 |
taaaactcttcttgaatctgtgacttcaagagcttgggaaaacaataatct |
10889454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 20 - 273
Target Start/End: Original strand, 8861184 - 8861437
Alignment:
| Q |
20 |
aaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaacta |
119 |
Q |
| |
|
||||||||| ||||||||||||||||||| | || ||| | |||||||||| ||||||||||||||||| || ||||||||| | || ||||| | |
|
|
| T |
8861184 |
aaagagacagtaatgaacatgttgctatcagagagcagcactaggaataacaatatcggtgttgttgcaattttaggtatgggaggtgtcggtaaaacga |
8861283 |
T |
|
| Q |
120 |
ccctcgcccaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaac |
219 |
Q |
| |
|
| || || |||||||||||||||||||||||||||||| | || |||||| | || |||||||||||||| || |||||||||||||||| | ||||| |
|
|
| T |
8861284 |
cacttgcacaacttgtttacaatgatgaaaaagttcaagagcactttgatctcaaagcatgggcttgtgtatcagaggattttgatatttcaactgtaac |
8861383 |
T |
|
| Q |
220 |
caagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttga |
273 |
Q |
| |
|
|| |||| |||||||| |||||||||||| | ||||| | |||||||||||| |
|
|
| T |
8861384 |
taaaactcttcttgaatctgtcacttcaagagcttgggaaaacaataatcttga |
8861437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 66 - 237
Target Start/End: Original strand, 10527281 - 10527452
Alignment:
| Q |
66 |
ataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactaccctcgcccaacttgtttacaatgatgaaaaagttcaacaacattt |
165 |
Q |
| |
|
|||| ||| |||||||||||||||| ||||| ||||||||| | || ||||| ||||| || ||||||||||||||||||||||| ||| |||| ||||| |
|
|
| T |
10527281 |
ataataatttaggtgttgttgcaatcttgggtatgggaggtgtcggtaaaacaacccttgcacaacttgtttacaatgatgaaaaggttgaacaccattt |
10527380 |
T |
|
| Q |
166 |
tgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaaccaagtctctccttgaatc |
237 |
Q |
| |
|
|||| | ||||| |||| || ||| || |||||||| ||| || |||||||||||||||||||| ||||||| |
|
|
| T |
10527381 |
tgatctcaaggcctgggtttatgtatcagaggatttcgatgttgtgagagtaaccaagtctctcattgaatc |
10527452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 66 - 237
Target Start/End: Original strand, 10517408 - 10517579
Alignment:
| Q |
66 |
ataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactaccctcgcccaacttgtttacaatgatgaaaaagttcaacaacattt |
165 |
Q |
| |
|
|||| ||| ||||||||| ||||||| |||| |||||||| | || ||||| ||||| || || ||||||||||||||| ||||||| |||||||||| |
|
|
| T |
10517408 |
ataataatttaggtgttgctgcaattgtgggtatgggaggcgtcggtaaaacgacccttgcacagtttgtttacaatgatgcaaaagttgaacaacattt |
10517507 |
T |
|
| Q |
166 |
tgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaaccaagtctctccttgaatc |
237 |
Q |
| |
|
|||||| || || |||| |||||| ||||||||||||||| || | |||| |||||||||| |||||||||| |
|
|
| T |
10517508 |
tgatttcaaagcctgggtttgtgtatctgaggattttgatgttattagagcaaccaagtctatccttgaatc |
10517579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 66 - 237
Target Start/End: Complemental strand, 11782128 - 11781957
Alignment:
| Q |
66 |
ataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactaccctcgcccaacttgtttacaatgatgaaaaagttcaacaacattt |
165 |
Q |
| |
|
|||| ||| |||||||||| ||||||||||| |||||||| | || ||||| ||||| || || |||||||||||||||| |||||| |||||||||| |
|
|
| T |
11782128 |
ataataatttaggtgttgtcgcaattttgggtatgggaggcgtcggtaaaacgacccttgcacagcttgtttacaatgatgtgaaagttgaacaacattt |
11782029 |
T |
|
| Q |
166 |
tgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaaccaagtctctccttgaatc |
237 |
Q |
| |
|
|||||| || | |||| |||||| || |||||||| ||| || | ||| |||||||||||||||||||||| |
|
|
| T |
11782028 |
tgatttcaaagtctgggtttgtgtatcggaggatttcgatgttgttagaataaccaagtctctccttgaatc |
11781957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 66 - 237
Target Start/End: Original strand, 10500500 - 10500671
Alignment:
| Q |
66 |
ataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactaccctcgcccaacttgtttacaatgatgaaaaagttcaacaacattt |
165 |
Q |
| |
|
|||| ||| |||||||||||||||||||||| |||||||| | || ||||| || || || |||||||||||||| || || ||| || || ||||||| |
|
|
| T |
10500500 |
ataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaacgacgataaaattgaagaacattt |
10500599 |
T |
|
| Q |
166 |
tgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaaccaagtctctccttgaatc |
237 |
Q |
| |
|
|||| ||||||||||| |||||| | |||||||| ||| || ||||| ||||||| |||||||||||||| |
|
|
| T |
10500600 |
tgatctgaaggcatggatttgtgtaccggaggatttcgatgttgtgagaataaccaaatctctccttgaatc |
10500671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 77 - 219
Target Start/End: Original strand, 13160935 - 13161077
Alignment:
| Q |
77 |
ggtgttgttgcaattttgggcatgggaggtttaggaaaaactaccctcgcccaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaagg |
176 |
Q |
| |
|
||||| |||||||||||||| ||||| ||| | || ||||| || || ||||||||| |||| |||||| || |||||||| | ||||||||| |||| | |
|
|
| T |
13160935 |
ggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaag |
13161034 |
T |
|
| Q |
177 |
catgggcttgtgtgtctgaggattttgatattttgagagtaac |
219 |
Q |
| |
|
|||| |||||| || |||||||| |||||| |||||||||| |
|
|
| T |
13161035 |
tctgggtttgtgtatcggaggatttcgatattctgagagtaac |
13161077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 77 - 219
Target Start/End: Original strand, 13170986 - 13171128
Alignment:
| Q |
77 |
ggtgttgttgcaattttgggcatgggaggtttaggaaaaactaccctcgcccaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaagg |
176 |
Q |
| |
|
||||| |||||||||||||| ||||| ||| | || ||||| || || ||||||||| |||| |||||| || |||||||| | ||||||||| |||| | |
|
|
| T |
13170986 |
ggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaag |
13171085 |
T |
|
| Q |
177 |
catgggcttgtgtgtctgaggattttgatattttgagagtaac |
219 |
Q |
| |
|
|||| |||||| || |||||||| |||||| |||||||||| |
|
|
| T |
13171086 |
tctgggtttgtgtatcggaggatttcgatattctgagagtaac |
13171128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 77 - 219
Target Start/End: Original strand, 13289620 - 13289762
Alignment:
| Q |
77 |
ggtgttgttgcaattttgggcatgggaggtttaggaaaaactaccctcgcccaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaagg |
176 |
Q |
| |
|
||||| || ||||||||||| ||||| ||| | || ||||| || || ||||||||| |||| |||||| || |||||||| | ||||||||| |||| | |
|
|
| T |
13289620 |
ggtgtggtcgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaag |
13289719 |
T |
|
| Q |
177 |
catgggcttgtgtgtctgaggattttgatattttgagagtaac |
219 |
Q |
| |
|
|||| |||||| || |||||||| ||||||||||||||||| |
|
|
| T |
13289720 |
tctgggtttgtgtatcggaggatttcgatattttgagagtaac |
13289762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 77 - 219
Target Start/End: Original strand, 13332859 - 13333001
Alignment:
| Q |
77 |
ggtgttgttgcaattttgggcatgggaggtttaggaaaaactaccctcgcccaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaagg |
176 |
Q |
| |
|
||||| |||||||||||||| ||||| ||| | || ||||| || || ||||||||| |||| |||||| || |||||||| | ||||||||| |||| | |
|
|
| T |
13332859 |
ggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaag |
13332958 |
T |
|
| Q |
177 |
catgggcttgtgtgtctgaggattttgatattttgagagtaac |
219 |
Q |
| |
|
|||| |||||| || |||||||| |||||| |||||||||| |
|
|
| T |
13332959 |
tctgggtttgtgtatcggaggatttcgatattctgagagtaac |
13333001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 216
Target Start/End: Original strand, 13344044 - 13344183
Alignment:
| Q |
77 |
ggtgttgttgcaattttgggcatgggaggtttaggaaaaactaccctcgcccaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaagg |
176 |
Q |
| |
|
||||| |||||||||||||| ||||| ||| | || ||||| || || ||||||||| |||| |||||| || |||||||| | ||||||||| |||| | |
|
|
| T |
13344044 |
ggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaag |
13344143 |
T |
|
| Q |
177 |
catgggcttgtgtgtctgaggattttgatattttgagagt |
216 |
Q |
| |
|
|||| |||||| || |||||||| |||||| ||||||| |
|
|
| T |
13344144 |
tctgggtttgtgtatcggaggatttcgatattctgagagt |
13344183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 26906793 - 26907048
Alignment:
| Q |
18 |
acaaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaac |
117 |
Q |
| |
|
||||||||||||||||||| ||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26906793 |
acaaagagacaataatgaatatgttgctatcagagagagacacaacccataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaac |
26906892 |
T |
|
| Q |
118 |
taccctcgcccaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagta |
217 |
Q |
| |
|
|||||| ||||||||| ||||||||||| || ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
26906893 |
tacccttgcccaacttctttacaatgataaagaagttcaacggcattttgatttgaaggcatgggtttgtgtgtctgaggattttgatattatgagagta |
26906992 |
T |
|
| Q |
218 |
accaagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttga |
273 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||| ||||||| |||||||||||| |
|
|
| T |
26906993 |
accaaatctctccttgaatcggtcacttccagaacttgggataccaataatcttga |
26907048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 66 - 237
Target Start/End: Complemental strand, 17853069 - 17852898
Alignment:
| Q |
66 |
ataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactaccctcgcccaacttgtttacaatgatgaaaaagttcaacaacattt |
165 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| ||||||||| | || ||||| ||||| || || |||||||||||||||||||| ||| |||| ||||| |
|
|
| T |
17853069 |
ataacaatttaggtgttgttgcaatattggggatgggaggtgtcggtaaaacgacccttgcacagcttgtttacaatgatgaaaaggttgaacatcattt |
17852970 |
T |
|
| Q |
166 |
tgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaaccaagtctctccttgaatc |
237 |
Q |
| |
|
|||| | || || |||| |||||| || || ||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
17852969 |
tgatctcaaagcctgggtttgtgtatcagaagattttgatgttgtgagagtaaccaagtctctccttgaatc |
17852898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 205
Target Start/End: Complemental strand, 7129038 - 7128961
Alignment:
| Q |
128 |
caacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgat |
205 |
Q |
| |
|
|||||||| |||||||| || |||| |||||||||||||| ||||| ||||| |||||| ||||| ||||||||| |
|
|
| T |
7129038 |
caacttgtatacaatgacaaagaagtgcaacaacattttgagttgaaaaaatgggtttgtgtttctgatgattttgat |
7128961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 66 - 237
Target Start/End: Original strand, 11484961 - 11485132
Alignment:
| Q |
66 |
ataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactaccctcgcccaacttgtttacaatgatgaaaaagttcaacaacattt |
165 |
Q |
| |
|
|||| ||| ||||||||||||||||||||| |||||||| | || ||||| ||||| || |||||||||||||| |||||||||||| |||| ||||| |
|
|
| T |
11484961 |
ataataatttaggtgttgttgcaattttggttatgggaggcgtcggtaaaacgacccttgcacaacttgtttacaacgatgaaaaagttgaacagcattt |
11485060 |
T |
|
| Q |
166 |
tgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaaccaagtctctccttgaatc |
237 |
Q |
| |
|
|||| | || ||||||| |||||| || |||||||| ||| | |||| |||||||||| ||||||||||| |
|
|
| T |
11485061 |
tgatctcaaagcatgggtttgtgtatcggaggatttcgatgtcgtgaggataaccaagtccctccttgaatc |
11485132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 236
Target Start/End: Complemental strand, 44957834 - 44957664
Alignment:
| Q |
66 |
ataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactaccctcgcccaacttgtttacaatgatgaaaaagttcaacaacattt |
165 |
Q |
| |
|
|||| ||| ||||||||||||| | || || ||||||||| | || ||||| || ||||| |||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
44957834 |
ataataatttaggtgttgttgccaccttaggtatgggaggtgtcggtaaaacgactctcgcacaacttgtttacaatgatataaaagttgaacaacattt |
44957735 |
T |
|
| Q |
166 |
tgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaaccaagtctctccttgaat |
236 |
Q |
| |
|
||| | || |||||| ||||| || |||||||| || || | ||| |||| |||||||| ||||||| |
|
|
| T |
44957734 |
cgatctcaaagcatggatatgtgtatcagaggatttcaatgttgttagaataacaaagtctcttcttgaat |
44957664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 66 - 273
Target Start/End: Original strand, 29836587 - 29836794
Alignment:
| Q |
66 |
ataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactaccctcgcccaacttgtttacaatgatgaaaaagttcaacaacattt |
165 |
Q |
| |
|
|||| ||||||||||| || |||||| |||||||||||| | || ||||| |||||||| | |||| | ||||| | ||| ||||| || | ||||| |
|
|
| T |
29836587 |
ataataatataggtgtagtcgcaattacaggcatgggaggtatcggtaaaacgaccctcgctcgacttatatacaaccaggaagaagttaaaaatcattt |
29836686 |
T |
|
| Q |
166 |
tgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaaccaagtctctccttgaatcggtcacttcaagaacatgggatagcaat |
265 |
Q |
| |
|
|||| | | | |||| |||||||||||| ||||||||||| |||||||||||||| |||||||||||| |||||||||||| |||| ||| |||| |
|
|
| T |
29836687 |
tgatgtacaagtctgggtttgtgtgtctgaagattttgatatgttgagagtaaccaaatctctccttgaagttgtcacttcaagagaatggaataccaat |
29836786 |
T |
|
| Q |
266 |
aatcttga |
273 |
Q |
| |
|
|| ||||| |
|
|
| T |
29836787 |
aaccttga |
29836794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 77 - 219
Target Start/End: Complemental strand, 136002 - 135860
Alignment:
| Q |
77 |
ggtgttgttgcaattttgggcatgggaggtttaggaaaaactaccctcgcccaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaagg |
176 |
Q |
| |
|
||||| |||||||||||||| ||||| ||| | || ||||| || || ||||||||| |||| |||||| || |||||||| | ||||||||| |||| | |
|
|
| T |
136002 |
ggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaag |
135903 |
T |
|
| Q |
177 |
catgggcttgtgtgtctgaggattttgatattttgagagtaac |
219 |
Q |
| |
|
|||| |||||| || |||||||| |||||| |||||||||| |
|
|
| T |
135902 |
tctgggtttgtgtatcggaggatttcgatattctgagagtaac |
135860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 77 - 219
Target Start/End: Complemental strand, 146053 - 145911
Alignment:
| Q |
77 |
ggtgttgttgcaattttgggcatgggaggtttaggaaaaactaccctcgcccaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaagg |
176 |
Q |
| |
|
||||| |||||||||||||| ||||| ||| | || ||||| || || ||||||||| |||| |||||| || |||||||| | ||||||||| |||| | |
|
|
| T |
146053 |
ggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaag |
145954 |
T |
|
| Q |
177 |
catgggcttgtgtgtctgaggattttgatattttgagagtaac |
219 |
Q |
| |
|
|||| |||||| || |||||||| |||||| |||||||||| |
|
|
| T |
145953 |
tctgggtttgtgtatcggaggatttcgatattctgagagtaac |
145911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 221
Target Start/End: Complemental strand, 31679845 - 31679703
Alignment:
| Q |
79 |
tgttgttgcaattttgggcatgggaggtttaggaaaaactaccctcgcccaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggca |
178 |
Q |
| |
|
||||||| ||||||| |||||||||||| | || ||||| |||| || |||||| ||||||||||| || | |||||| ||| ||||||| | || || |
|
|
| T |
31679845 |
tgttgtttcaattttcggcatgggaggtgtcggtaaaacagccctagctcaacttctttacaatgataaagatgttcaagaacgttttgatgtaaaagct |
31679746 |
T |
|
| Q |
179 |
tgggcttgtgtgtctgaggattttgatattttgagagtaacca |
221 |
Q |
| |
|
|||| |||| |||| || || |||||| ||||||| ||||||| |
|
|
| T |
31679745 |
tgggtttgtctgtccgaagagtttgatgttttgagggtaacca |
31679703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University