View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_222 (Length: 272)
Name: NF9839A_low_222
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_222 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 36 - 272
Target Start/End: Original strand, 31745095 - 31745331
Alignment:
| Q |
36 |
atggacatcaaaaaagagtctataccaattaccaaaataatagactctctctagtcctatttaaaataaatatttaggttaacaaacgttaatggatcta |
135 |
Q |
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| T |
31745095 |
atggacctcaaaaaagagtctataccaattaccaaaataatatactctctctagtcctatttaaaataaatatttaggttaacaaacgttaatggatctg |
31745194 |
T |
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| Q |
136 |
gtccaattatttaactagattcattaacttttgttgatttaaatgtctttttataaaaaggatcggagggagtattttatagtaagagaatgagattcaa |
235 |
Q |
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| T |
31745195 |
gtccaattatttaactagatacatcaacttttattgatttaaatgtctttttataaaaaggaccggatggagtattttatagtaagagaataagattcaa |
31745294 |
T |
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| Q |
236 |
taatttattaaaaaatactaaaaatggtaattgtaaa |
272 |
Q |
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| T |
31745295 |
taatttattaaaaaatactaaaaatggtaattgtaaa |
31745331 |
T |
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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 103 - 186
Target Start/End: Complemental strand, 10069312 - 10069229
Alignment:
| Q |
103 |
aaatatttaggttaacaaacgttaatggatctagtccaattatttaactagattcattaacttttgttgatttaaatgtctttt |
186 |
Q |
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| T |
10069312 |
aaatatttaggtcaacaaaagttaatgtatctagtccaattttttaaccagatacataaacttttattgactcaaatgtctttt |
10069229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 32045160 - 32045211
Alignment:
| Q |
157 |
cattaacttttgttgatttaaatgtctttttataaaaaggatcggagggagta |
209 |
Q |
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| T |
32045160 |
cattaacttttgttgagttaaatatc-ttttataaataggatcggagggagta |
32045211 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 213
Target Start/End: Complemental strand, 9213572 - 9213512
Alignment:
| Q |
152 |
agattcattaacttttgttgatttaaatgtctttttataaaaaggatcggagggagtatttt |
213 |
Q |
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| T |
9213572 |
agatacatcaacttttgttgactaaaatgtctttt-ataaataggaccggagggagtatttt |
9213512 |
T |
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