View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_223 (Length: 271)
Name: NF9839A_low_223
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_223 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 7530021 - 7529839
Alignment:
| Q |
1 |
aggggggaggatactgatagtgatgccaaagacgattacaatcagcgtgtcgttaccagtaagcgtagggatgtcgttgaacgtggatctgatgatgatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7530021 |
aggggggaggatactgatagtgatgccaaagacgattacaatcagcgtgtcgttaccagtaagcgtagggatgtcgttgaaagtggatctgatgatgatg |
7529922 |
T |
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| Q |
101 |
aacaggaagttgatgcagcagctagaagaagcataaggtagtttttgttttcgattaattaattaattaaccacattgctgtg |
183 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7529921 |
aacaggaagttgatgcagcagctagaagaagcataaggtagtttttgttttcgattaattaattaattaaccacattgatgtg |
7529839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 7538869 - 7539051
Alignment:
| Q |
1 |
aggggggaggatactgatagtgatgccaaagacgattacaatcagcgtgtcgttaccagtaagcgtagggatgtcgttgaacgtggatctgatgatgatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7538869 |
aggggggaggatactgatagtgatgccaaagacgattacaatcagcgtgtcgttaccagtaagcgtagggatgtcgttgaaagtggatctgatgatgatg |
7538968 |
T |
|
| Q |
101 |
aacaggaagttgatgcagcagctagaagaagcataaggtagtttttgttttcgattaattaattaattaaccacattgctgtg |
183 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7538969 |
aacaggaagttgatgcagcagctagaagaagcataaggtagtttttgttttcgattaattaattaattaaccacattgttgtg |
7539051 |
T |
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