View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_224 (Length: 271)
Name: NF9839A_low_224
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_224 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 12 - 271
Target Start/End: Complemental strand, 13058835 - 13058576
Alignment:
| Q |
12 |
tgttcttcctgcatacaagcctcggtagcatcctaaccttattcggtggtcttatagatcactgtcgactctaagtctgtcaagggttgtgaagtggcgt |
111 |
Q |
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| T |
13058835 |
tgttcttcctgcatacaagcctcggtagcatcctaaccttattcggtggtcttatagatcactgtcgactctaagcctgtcaagggttgtgaagtggctt |
13058736 |
T |
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| Q |
112 |
tgtttcgttagttggtggtatttgcttccagattttccgcctccgagtcagaggttcactattattgttttcggttgtgatattgtagacggatttctcg |
211 |
Q |
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| T |
13058735 |
tgtttcgttagttggtggtatttgcttccagattttccgcctccgtgtcagaggttcactattattggtttcggttgtgatattgtagacggatttctag |
13058636 |
T |
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| Q |
212 |
tttgttgtttcgaaacccgttagggtctgttattgtgcttgtggtgctcagtcttattga |
271 |
Q |
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| T |
13058635 |
tttgttgtttcgaaacccgttagggtctgttattgtgcttgtggtgctcagtctcattga |
13058576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 10 - 264
Target Start/End: Complemental strand, 10280773 - 10280518
Alignment:
| Q |
10 |
ggtgttcttcctgcatacaagcctcggtagcatcctaaccttattcggtggtcttatagatcactgtcgactctaag-tctgtcaagggttgtgaagtgg |
108 |
Q |
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| T |
10280773 |
ggtgttcttccgacgtacaagtctcagtagcatcctaaccttctctggtggtcttatagatcactgtcgactctaaggtcagtcaagggttgtgaagtgg |
10280674 |
T |
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| Q |
109 |
cgttgtttcgttagttggtggtatttgcttccagattttccgcctccgagtcagaggttcactattattgttttcggttgtgatattgtagacggatttc |
208 |
Q |
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| T |
10280673 |
cgttgtttcgttggttgatggtatttgctttcaaatctgtcgcctccgtgtcgaaggttcactgtcgttggtttcagttgtgatattgtagacggatttc |
10280574 |
T |
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| Q |
209 |
tcgtttgttgtttcgaaacccgttagggtctgttattgtgcttgtggtgctcagtc |
264 |
Q |
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| T |
10280573 |
tagtttgttgttctgaaactcgttagggtctgttattgtgctcgtggtgctcagtc |
10280518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 10 - 261
Target Start/End: Complemental strand, 5536004 - 5535752
Alignment:
| Q |
10 |
ggtgttcttcctgcatacaagcctcggtagcatcctaaccttattcggtggtcttatagatcactgtcgactctaa-gtctgtcaagggttgtgaagtgg |
108 |
Q |
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||||||||||| ||||||||||||| |||||||||||||||| | |||||||||||| | ||||||||| ||||| ||| | |||||||| |||||| |
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| T |
5536004 |
ggtgttcttccggcatacaagcctcagtagcatcctaaccttctctggtggtcttatatagcactgtcgaatctaaggtccgccaagggttacaaagtgg |
5535905 |
T |
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| Q |
109 |
cgttgtttcgttagttggtggtatttgcttccagattttccgcctccgagtcagaggttcactattattgttttcggttgtgatattgtagacggatttc |
208 |
Q |
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| T |
5535904 |
agttgtttcgttggttggtggtatttgctttcagatatgtcgccttcgtggaggagaatcactatcgttggtttcagttgtgatactgtagatgaattta |
5535805 |
T |
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| Q |
209 |
tcgtttgttgtttcgaaacccgttagggtctgttattgtgcttgtggtgctca |
261 |
Q |
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| T |
5535804 |
tagtttgttgtttcgaaattcgttagggtctgttattgtgctcgaggtgctca |
5535752 |
T |
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