View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_226 (Length: 270)
Name: NF9839A_low_226
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_226 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 10779181 - 10779450
Alignment:
| Q |
1 |
tcaccataatcataatcagaatcaatcaaaagctgctccaaattagaactcagcttattcaaacttataacctcgaggttacgagcatgatcggagccat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10779181 |
tcaccataatcataatcagaatcaatcaaaagctgctccaaattagaactcagcttattcaaacttataacctcgaggttacgagcatgatcggagccat |
10779280 |
T |
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| Q |
101 |
tagggcatatgttgtgactaatggatccatttgacaagtgtgacgatgatgtattattgctcaaagacgatgagggttcagccgaattagccattaatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10779281 |
tagggcatatgttgtgactaatggatccatttgacaagtgtgacgatgatgtattattgctcaaagacgatgagggttcagccgaattagccattaatta |
10779380 |
T |
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| Q |
201 |
atttgagaatctatatgaacctataacataatcttcttataccacaaaactcaaaaacactaatgtgaga |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
10779381 |
atttgagaatctatatgaacctataacataatcttcttataccacaaaactcaaaaacattaatgtgaga |
10779450 |
T |
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