View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9839A_low_23 (Length: 442)
Name: NF9839A_low_23
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_23 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 15 - 428
Target Start/End: Complemental strand, 6252408 - 6251995
Alignment:
| Q |
15 |
atggacatcaataaaccacaatatcctcaaccactccacacaactctttatcaaacaacacaaccgcctccttcatgtgaatcggttggcacgttcttag |
114 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6252408 |
atggacctcaataaaccacaatatcctcaaccactccacacaactctttatcaaacaacacaatcgcctcctccatgtgaatcggttggcacgttcttag |
6252309 |
T |
|
| Q |
115 |
gtctaagaaaattttggcgatacccatgcatgatcgaagtagaagatgctcactctgaggatctcgtaactgtggaagaagttacattaactcaacaaca |
214 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6252308 |
gtcaaagaaaattttggcgatacccatgcatgatcgaagtagaagatgctcactctgaggatctcgtaactgtggaagaagttgcattaactcaacaaca |
6252209 |
T |
|
| Q |
215 |
ctggaaactctcttcatgaccaactcctcgataaaaccattatctcagctaacaacccctccaaacaatttcacccccaatgacggcctcccaatatcca |
314 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6252208 |
ctggaaactctcttcatgaccaacccctcgataaaaccattatctcagctaacaacccctccaaacaatttcacccccaatgacggcctcccaatatcca |
6252109 |
T |
|
| Q |
315 |
taggaaaaaacccctcgcgatgctgattaccatcacatgaaggccaaaagatcttaatcttatgaatattcaataccagacccaattctagtccaaaaac |
414 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6252108 |
tagggaaaaacccctcgcgatgctgattaccatcacatgaaggccaaaagatcttaatcttacgaatattcaataccagacccaattctagtccaaaaac |
6252009 |
T |
|
| Q |
415 |
tcgaatgatgtcca |
428 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
6252008 |
tcgaatgatgtcca |
6251995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 15 - 428
Target Start/End: Complemental strand, 6173064 - 6172652
Alignment:
| Q |
15 |
atggacatcaataaaccacaatatcctcaaccactccacacaactctttatcaaacaacacaaccgcctccttcatgtgaatcggttggcacgttcttag |
114 |
Q |
| |
|
|||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||| |
|
|
| T |
6173064 |
atggacctccataaaccacaatatcctcaaccgctccacacaactctttatcaaacaacacaaccacctcctccatgtgaattggttggcacgttcttag |
6172965 |
T |
|
| Q |
115 |
gtctaagaaaattttggcgatacccatgcatgatcgaagtagaagatgctcactctgaggatctcgtaactgtggaagaagttacattaactcaacaaca |
214 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
6172964 |
gtcaacgaaaattttggcgatacccatgcatgatcgaagtagaagatgctcactctgaggatctcgtaactgtggaagaaggtgcattaactcaacaaca |
6172865 |
T |
|
| Q |
215 |
ctggaaactctcttcatgaccaactcctcgataaaaccattatctcagctaacaacccctccaaacaatttcacccccaatgacggcctcccaatatcca |
314 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6172864 |
ctggaaactctcttcatgaccaacctctcgataaaaccattatctcagctaacaacccctccaaacaatttcacccccaatgacggcctcccaatatcca |
6172765 |
T |
|
| Q |
315 |
taggaaaaaacccctcgcgatgctgattaccatcacatgaaggccaaaagatcttaatcttatgaatattcaataccagacccaattctagtccaaaaac |
414 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6172764 |
tagggaaaaacccctcgcgatgctgatta-catcacatgaaggccaaaagatctcaatcttacgaatattcaataccagacccaattctagtccaaaaac |
6172666 |
T |
|
| Q |
415 |
tcgaatgatgtcca |
428 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
6172665 |
tcgaatgatgtcca |
6172652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 28 - 186
Target Start/End: Original strand, 49018903 - 49019061
Alignment:
| Q |
28 |
aaccacaatatcctcaaccactccacacaactctttatcaaacaacacaaccgcctccttcatgtgaatcggttggcacgttcttaggtctaagaaaatt |
127 |
Q |
| |
|
||||||||| ||||||||| ||||||| | ||||||||||||||||| | | ||||||| |||||||||||| || || | ||| | | ||||||| | |
|
|
| T |
49018903 |
aaccacaatgtcctcaacccctccacatagctctttatcaaacaacatagctgcctcctccatgtgaatcggctgacatatccttcagccaaagaaaagt |
49019002 |
T |
|
| Q |
128 |
ttggcgatacccatgcatgatcgaagtagaagatgctcactctgaggatctcgtaactg |
186 |
Q |
| |
|
||||| ||||| || || |||||||||| |||| || ||| |||||| |||||||||| |
|
|
| T |
49019003 |
ttggcaatacctatacacgatcgaagtaaaagagactaactatgaggagctcgtaactg |
49019061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 426
Target Start/End: Original strand, 53378904 - 53378989
Alignment:
| Q |
340 |
attaccatcacatgaaggccaaaagatcttaatcttatgaatattcaataccagacccaattctagtccaaaaactcgaatgatgtc |
426 |
Q |
| |
|
|||||||| ||||||| |||||||||||| | ||||| ||||||||||| | |||||||||||| | ||||| |||||| |||||| |
|
|
| T |
53378904 |
attaccat-acatgaatgccaaaagatctcagtcttacgaatattcaattcaagacccaattctggatcaaaatctcgaacgatgtc |
53378989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 27 - 423
Target Start/End: Original strand, 10404425 - 10404820
Alignment:
| Q |
27 |
aaaccacaatatcctcaaccactccacacaactctttatcaaacaacacaaccgcctccttcatgtgaatcggttggcacgttcttaggtctaagaaaat |
126 |
Q |
| |
|
|||||||||||||||||||| |||||| | ||| ||||||||||||| | | ||| || ||||||||| ||||||||| |||||| | | |||||||| |
|
|
| T |
10404425 |
aaaccacaatatcctcaaccgctccacgaagctcattatcaaacaacatagtcaccttctccatgtgaattggttggcacattcttatgccaaagaaaat |
10404524 |
T |
|
| Q |
127 |
tttggcgatacccatgcatgatcgaagtagaagatgctcactctgaggatctcgtaactgtggaagaagttacattaactcaacaacactggaaactctc |
226 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||| || |||||| ||||||||||||||| |||||| ||||| |
|
|
| T |
10404525 |
tttggcaatacccatgcatgatcgaagtagaagaagctcactctaaggatctcgtaactatgaaagaaggagcattaactcaacaaccctggaagctctc |
10404624 |
T |
|
| Q |
227 |
ttcatgaccaactcctcgataaaaccattatctcagctaacaacccctccaaacaatttcacccccaatgacggcctcccaatatccataggaaaaaacc |
326 |
Q |
| |
|
|||||| |||| ||||||||||||| |||||| |||||||| |||||||| ||||||| |||||||| ||||||||||||||||| ||| || || | |
|
|
| T |
10404625 |
ttcatggtcaacccctcgataaaacctttatcttggctaacaatccctccaagaaatttca-ccccaatgtcggcctcccaatatccacagggaacaagc |
10404723 |
T |
|
| Q |
327 |
cctcgcgatgctgattaccatcacatgaaggccaaaagatcttaatcttatgaatattcaataccagacccaattctagtccaaaaactcgaatgat |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| | ||||| |||||||||||| ||||||||||||| |||||||||||| |||||| |
|
|
| T |
10404724 |
cctcgcgatgctgattaccatcacatgaaggtcaaaagatctcagtcttacgaatattcaatatcagacccaattctggtccaaaaactcaaatgat |
10404820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 28 - 426
Target Start/End: Complemental strand, 29337234 - 29336835
Alignment:
| Q |
28 |
aaccacaatatcctcaaccactccacacaactctttatcaaacaa-cacaaccgcctccttcatgtgaatcggttggcacgttcttaggtctaagaaaat |
126 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||||||| || || | |||| |||| |||||||||||| |||||||| |||||| | ||||||| |
|
|
| T |
29337234 |
aaccacaatgtcctcaaccactccacgcaactctttatcaaaaaaacatagccgcttcctccatgtgaatcggctggcacgtccttaggccaaagaaaac |
29337135 |
T |
|
| Q |
127 |
tttggcgatacccatgcatgatcgaagtagaagatgctcactctgaggatctcgtaactgtggaagaagttacattaactcaacaacactggaaactctc |
226 |
Q |
| |
|
||||||||||||| |||| ||| ||||||||||| |||||||||||||||||| ||||||||||||||| | |||||||||| | | | || |||| |
|
|
| T |
29337134 |
tttggcgatacccttgcacgattgaagtagaagaagctcactctgaggatctcataactgtggaagaagatgcattaactcagtagcctttaaagttctc |
29337035 |
T |
|
| Q |
227 |
ttcatgaccaactcctcgataaaaccattatctcagctaacaacccctccaaacaatttcacccccaatg-acggcctcccaatatcc-ataggaaaaaa |
324 |
Q |
| |
|
|||||| | | | |||||||||||| |||||| |||||||||| ||| | |||||| ||||| |||| | |||||||||||||| | ||||||||| |
|
|
| T |
29337034 |
ttcatggcaagcccctcgataaaacatgtatctcgactaacaacccttccgagcaattttacccctaatgtcccgcctcccaatatccaaaaggaaaaaa |
29336935 |
T |
|
| Q |
325 |
cccctcgcgatgctgattaccatcacatgaaggccaaaagatcttaatcttatgaatattcaataccagacccaattctagtccaaaaactcgaatgatg |
424 |
Q |
| |
|
||| || |||||| ||||||||||||||||||| ||||||||| | ||||| ||||||||||| | |||||||||||| | | | |||| ||||||||| |
|
|
| T |
29336934 |
tccc-cg-gatgcttattaccatcacatgaaggcaaaaagatctcagtcttacgaatattcaattcaagacccaattctggcctagaaacccgaatgatg |
29336837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 32116582 - 32116659
Alignment:
| Q |
28 |
aaccacaatatcctcaaccactccacacaactctttatcaaacaacacaaccgcctccttcatgtgaatcggttggca |
105 |
Q |
| |
|
||||||||| ||||||||| |||||| |||||||||||||||||||| | |||||||| |||||||||||||||||| |
|
|
| T |
32116582 |
aaccacaatgtcctcaaccgctccacccaactctttatcaaacaacatagtcgcctcctccatgtgaatcggttggca |
32116659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 32120878 - 32120958
Alignment:
| Q |
28 |
aaccacaatatcctcaaccactccacacaactctttatcaaacaacacaaccgcctccttcatgtgaatcggttggcacgt |
108 |
Q |
| |
|
||||||| | ||||||| |||||||| || ||||||||||||||||| | || |||||| ||||||||||||||| ||||| |
|
|
| T |
32120878 |
aaccacattgtcctcaatcactccacgcagctctttatcaaacaacatagccacctcctccatgtgaatcggttgacacgt |
32120958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 195
Target Start/End: Complemental strand, 26224927 - 26224785
Alignment:
| Q |
53 |
cacaactctttatcaaacaacacaaccgcctccttcatgtgaatcggttggcacgttcttaggtctaagaaaattttggcgatacccatgcatgatcgaa |
152 |
Q |
| |
|
||||||||||| |||||||||| | |||||||| |||||| |||||||||||| | || | | || |||| |||||||||| |||||||| ||| | |
|
|
| T |
26224927 |
cacaactctttgtcaaacaacatagacgcctcctccatgtgcatcggttggcacatcctcaagaaaaataaaagtttggcgatatccatgcataatcaac |
26224828 |
T |
|
| Q |
153 |
gtagaagatgctcactctgaggatctcgtaactgtggaagaag |
195 |
Q |
| |
|
| |||||| ||||| | | ||||| || ||| ||| ||||||| |
|
|
| T |
26224827 |
gcagaagaagctcattattaggatttcttaattgtagaagaag |
26224785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 163; Significance: 7e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 27 - 345
Target Start/End: Original strand, 434244 - 434562
Alignment:
| Q |
27 |
aaaccacaatatcctcaaccactccacacaactctttatcaaacaacacaaccgcctccttcatgtgaatcggttggcacgttcttaggtctaagaaaat |
126 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| ||||||| | || ||||| |||||||| |||||| || |||| |||| | ||||||| |
|
|
| T |
434244 |
aaaccacaatatcctcaactgctccacacaactctttatcgaacaacatagtcgtctcctccatgtgaaccggttgacaggttcataggccaaagaaaag |
434343 |
T |
|
| Q |
127 |
tttggcgatacccatgcatgatcgaagtagaagatgctcactctgaggatctcgtaactgtggaagaagttacattaactcaacaacactggaaactctc |
226 |
Q |
| |
|
||||| |||||||||||||||||||||||||| | ||||| |||||||||||||||| |||||||||| | ||||||||||||||| |||||| ||||| |
|
|
| T |
434344 |
tttggtgatacccatgcatgatcgaagtagaaaaatctcacgctgaggatctcgtaaccgtggaagaaggtgcattaactcaacaactctggaagctctc |
434443 |
T |
|
| Q |
227 |
ttcatgaccaactcctcgataaaaccattatctcagctaacaacccctccaaacaatttcacccccaatgacggcctcccaatatccataggaaaaaacc |
326 |
Q |
| |
|
|| ||| ||||| ||||||||||||| ||||| | ||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||| || || | |
|
|
| T |
434444 |
tttatggccaacccctcgataaaacctttatcgcggctaacaacccctccaagcaatttcacccccaatgtcggcctcctaatatccacagggaacaaac |
434543 |
T |
|
| Q |
327 |
cctcgcgatgctgattacc |
345 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
434544 |
cctcgcgatgttgattacc |
434562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 32 - 232
Target Start/End: Complemental strand, 6821318 - 6821118
Alignment:
| Q |
32 |
acaatatcctcaaccactccacacaactctttatcaaacaacacaaccgcctccttcatgtgaatcggttggcacgttcttaggtctaagaaaattttgg |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| | ||| || | ||||||||| ||||||||| | |||||| | ||||||| ||||| |
|
|
| T |
6821318 |
acaatatcctcaaccactccacacaactctttatcgaacaacatagtcgcttcttccatgtgaattggttggcacatccttaggccaaagaaaactttgg |
6821219 |
T |
|
| Q |
132 |
cgatacccatgcatgatcgaagtagaagatgctcactctgaggatctcgtaactgtggaagaagttacattaactcaacaacactggaaactctcttcat |
231 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||| | |||| ||||| || ||||||||||| | || |||||||||||| ||| || |||||||||| |
|
|
| T |
6821218 |
tgatacccatgtatgatcgaagtagaagaagctcagtatgagaatctcttagttgtggaagaagatgcactaactcaacaaccctgaaagctctcttcat |
6821119 |
T |
|
| Q |
232 |
g |
232 |
Q |
| |
|
| |
|
|
| T |
6821118 |
g |
6821118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 149; Significance: 2e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 30 - 426
Target Start/End: Complemental strand, 9684589 - 9684193
Alignment:
| Q |
30 |
ccacaatatcctcaaccactccacacaactctttatcaaacaacacaaccgcctccttcatgtgaatcggttggcacgttcttaggtctaagaaaatttt |
129 |
Q |
| |
|
||||||| ||||||||| || ||| || ||||||||||||||||| | ||||||||| ||||||||| ||||| || || |||| | | ||||||| || |
|
|
| T |
9684589 |
ccacaatgtcctcaaccgcttcacgcagctctttatcaaacaacatagccgcctcctccatgtgaattggttgacatgtccttaagccaaagaaaagttg |
9684490 |
T |
|
| Q |
130 |
ggcgatacccatgcatgatcgaagtagaagatgctcactctgaggatctcgtaactgtggaagaagttacattaactcaacaacactggaaactctcttc |
229 |
Q |
| |
|
||| ||||||||||| | ||||||||||||| |||||||||||||||| ||||| || |||||||| | |||||||||| || | ||| || |||||||| |
|
|
| T |
9684489 |
ggcaatacccatgcacgttcgaagtagaagaagctcactctgaggatcccgtaagtgaggaagaagatgcattaactcagcagccctgaaagctctcttc |
9684390 |
T |
|
| Q |
230 |
atgaccaactcctcgataaaaccattatctcagctaacaacccctccaaacaatttcacccccaatgacggcctcccaatatccataggaaaaaacccct |
329 |
Q |
| |
|
||| ||||| ||||||||||||| ||||||| ||||||| |||| || | ||||||||||||||| | |||||||||||||||| ||||| |||||| |
|
|
| T |
9684389 |
atggccaacccctcgataaaacctttatctcggctaacagccccaccgagcaatttcacccccaacgtcggcctcccaatatccgcgggaaacaaccccc |
9684290 |
T |
|
| Q |
330 |
cgcgatgctgattaccatcacatgaaggccaaaagatcttaatcttatgaatattcaataccagacccaattctagtccaaaaactcgaatgatgtc |
426 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||| | | ||||| |||||||||| | || ||||||| | | ||| |||| | ||||||||| |
|
|
| T |
9684289 |
cacgatgcttattaccatcacatgaaggccaaaagatttcagtcttacaaatattcaattcaaggcccaattatggcccataaacccaaatgatgtc |
9684193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 29 - 294
Target Start/End: Original strand, 8589017 - 8589275
Alignment:
| Q |
29 |
accacaatatcctcaaccactccacacaactctttatcaaacaacacaaccgcctccttcatgtgaatcggttggcacgttcttaggtctaagaaaattt |
128 |
Q |
| |
|
||||||||||||| ||| ||||| |||||||||||||||||||| | ||| || | |||||||||| |||||||| | |||||| | ||||||| || |
|
|
| T |
8589017 |
accacaatatccttgaccgatccacgcaactctttatcaaacaacatagtcgcttcatccatgtgaatcagttggcacatccttaggccaaagaaaagtt |
8589116 |
T |
|
| Q |
129 |
tggcgatacccatgcatgatcgaagtagaagatgctcactctgaggatctcgtaactgtggaagaagttacattaactcaacaacactggaaactctctt |
228 |
Q |
| |
|
| ||||| ||||||||||||||||||||| || | |||||| ||||||| | ||| |||||||||| | ||||||||||||| | | |||||| |
|
|
| T |
8589117 |
tagcgattcccatgcatgatcgaagtagaggaagttcactcggaggatcccttaattgtggaagaatatgcattaactcaaca----ttca---tctctt |
8589209 |
T |
|
| Q |
229 |
catgaccaactcctcgataaaaccattatctcagctaacaacccctccaaacaatttcacccccaa |
294 |
Q |
| |
|
| || ||||| ||| |||||||| || ||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
8589210 |
cgtggccaaccccttgataaaacatctacctcggctaacaacccctccaagcaatttcacccccaa |
8589275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 9e-74; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 28 - 388
Target Start/End: Original strand, 19036376 - 19036736
Alignment:
| Q |
28 |
aaccacaatatcctcaaccactccacacaactctttatcaaacaacacaaccgcctccttcatgtgaatcggttggcacgttcttaggtctaagaaaatt |
127 |
Q |
| |
|
||||||||| ||||||||| || ||| ||||||||||| |||||||| |||||||| |||||||||| |||||||| |||| | | | ||| | |
|
|
| T |
19036376 |
aaccacaatgtcctcaaccgcttcacgcaactctttataaaacaacatggtcgcctcctccatgtgaatcaactggcacgtccttaagccagataaatat |
19036475 |
T |
|
| Q |
128 |
ttggcgatacccatgcatgatcgaagtagaagatgctcactctgaggatctcgtaactgtggaagaagttacattaactcaacaacactggaaactctct |
227 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| |||||||||||||||| |||||||| |||||||| | |||||||||| || | |||||| |||||| |
|
|
| T |
19036476 |
ttggcaatacccatgcacaatcgaagtagaagaagctcactctgaggatcccgtaactgaggaagaagatgcattaactcagcagccctggaagctctct |
19036575 |
T |
|
| Q |
228 |
tcatgaccaactcctcgataaaaccattatctcagctaacaacccctccaaacaatttcacccccaatgacggcctcccaatatccataggaaaaaaccc |
327 |
Q |
| |
|
||||| ||||| |||| ||||||| ||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||| ||| || ||||| |
|
|
| T |
19036576 |
tcatggccaacccctcaataaaacttttatctcgactaacaacccctccaagcaatttcacccccaatgttggcctcccaatatccgcagggaacaaccc |
19036675 |
T |
|
| Q |
328 |
ctcgcgatgctgattaccatcacatgaaggccaaaagatcttaatcttatgaatattcaat |
388 |
Q |
| |
|
| | ||||||| |||||||||| |||||||||||||||||| | ||||| |||||||||| |
|
|
| T |
19036676 |
cccacgatgcttattaccatcatatgaaggccaaaagatctcagtcttacaaatattcaat |
19036736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 28 - 290
Target Start/End: Complemental strand, 28040283 - 28040022
Alignment:
| Q |
28 |
aaccacaatatcctcaaccactccacacaactctttatcaaacaacacaaccgcctccttcatgtgaatcggttggcacgttcttaggtctaagaaaatt |
127 |
Q |
| |
|
||||||||| ||||||||| || ||| ||||| ||||||||||| || | || |||||| ||||||||||||||||||||| |||| | | ||||||| |
|
|
| T |
28040283 |
aaccacaatgtcctcaaccgcttcacgcaactttttatcaaacaccatagccacctcctccatgtgaatcggttggcacgtccttaagccaaagaaaaga |
28040184 |
T |
|
| Q |
128 |
ttggcgatacccatgcatgatcgaagtagaagatgctcactctgaggatctcgtaactgtggaagaagttacattaactcaacaacactggaaactctct |
227 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||| ||| ||||||||||| |||||||| |||||||| | ||||| | | || | ||| || |||||| |
|
|
| T |
28040183 |
ttggcaatacccatgcacgatcgaagtagaagaagctaactctgaggattccgtaactgaggaagaagatgtattaa-ttagcagccctgtaagctctct |
28040085 |
T |
|
| Q |
228 |
tcatgaccaactcctcgataaaaccattatctcagctaacaacccctccaaacaatttcaccc |
290 |
Q |
| |
|
||||| | ||| |||| |||||||| ||||||| |||| | ||||||| | ||||||||||| |
|
|
| T |
28040084 |
tcatggctaacccctcaataaaacctttatctcgtctaaaagcccctccgagcaatttcaccc |
28040022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 28 - 426
Target Start/End: Original strand, 37201205 - 37201600
Alignment:
| Q |
28 |
aaccacaatatcctcaaccactccacacaactctttatcaaacaacacaaccgcctccttcatgtgaatcggttggcacgttcttaggtctaagaaaatt |
127 |
Q |
| |
|
||||||||| ||||||||| |||||| ||||||||||||||||| || | |||||| |||||||||||| |||||| || |||||||||||||||| | |
|
|
| T |
37201205 |
aaccacaatgtcctcaaccgctccacgcaactctttatcaaacatcatagtcgcctctttcatgtgaatcaattggcatgtccttaggtctaagaaaaat |
37201304 |
T |
|
| Q |
128 |
ttggcgatacccatgcatgatcgaagtagaagatgctcactctgaggatctcgtaactgtggaagaagttacattaactcaacaacactggaaactctct |
227 |
Q |
| |
|
|||| |||||||||| ||| | |||||| || | | ||||| ||||||||| |||| ||| ||||||| |||||||||||| | |||||| |||||| |
|
|
| T |
37201305 |
ttggtgatacccatgtatgcttgaagtaaaataagttcactttgaggatcttgtaagtgtagaagaagatacattaactcagtagtcctggaagctctct |
37201404 |
T |
|
| Q |
228 |
tcatgaccaactcctcgataaaaccattatctcagctaacaacccctccaaacaatttcacccccaatgacggcctcccaatatccataggaaaaaaccc |
327 |
Q |
| |
|
|| || ||| ||| | |||||| |||| || || ||||||| ||||| ||||||| | |||| |||| ||||||||| || ||| || || | |
|
|
| T |
37201405 |
tcgtggttaaccccttgttaaaacttttatttcggc--acaacccttccaagtaatttca-cgccaacatcggcttcccaatattcaaagggaacaaact |
37201501 |
T |
|
| Q |
328 |
ctcgcgatgctgattaccatcacatgaaggccaaaagatcttaatcttatgaatattcaataccagacccaattctagtccaaaaactcgaatgatgtc |
426 |
Q |
| |
|
| | ||||| ||| ||||||||||||||||| || ||| |||||||||||||||||| | || ||||||||| || | ||| ||||||||||||| |
|
|
| T |
37201502 |
ccgacaatgcttattgccatcacatgaaggccagaaagtctcgatcttatgaatattcaattcaaggcccaattctggttctaaatctcgaatgatgtc |
37201600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 28 - 194
Target Start/End: Complemental strand, 7794073 - 7793907
Alignment:
| Q |
28 |
aaccacaatatcctcaaccactccacacaactctttatcaaacaacacaaccgcctccttcatgtgaatcggttggcacgttcttaggtctaagaaaatt |
127 |
Q |
| |
|
|||||||| |||||||| ||||||| ||| ||||||||||| |||| | |||||||| ||||||||| ||||||||||| |||||| | ||||||||| |
|
|
| T |
7794073 |
aaccacaacgtcctcaactactccacccaattctttatcaaataacatagtcgcctcctccatgtgaattggttggcacgtccttaggccaaagaaaatt |
7793974 |
T |
|
| Q |
128 |
ttggcgatacccatgcatgatcgaagtagaagatgctcactctgaggatctcgtaactgtggaagaa |
194 |
Q |
| |
|
|||| |||||||| |||||||||||||||||| ||||| | ||| |||||||||| |||||||||| |
|
|
| T |
7793973 |
ttggtgatacccaaacatgatcgaagtagaagaagctcattatgacgatctcgtaattgtggaagaa |
7793907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 41 - 291
Target Start/End: Complemental strand, 32500051 - 32499802
Alignment:
| Q |
41 |
tcaaccactccacacaactctttatcaaacaacacaaccgcctccttcatgtgaatcggttggcacgttcttaggtctaagaaaattttggcgataccca |
140 |
Q |
| |
|
|||||| ||| |||||||| |||||||| ||||| || | ||||| || ||||| |||| ||| || || ||||| ||| ||| |||||||||||||| |
|
|
| T |
32500051 |
tcaaccgctctacacaactttttatcaagcaacataatcatctcctccacatgaattggttagcatgtcctcaggtcaaaggaaagtttggcgataccca |
32499952 |
T |
|
| Q |
141 |
tgcatgatcgaagtagaagatgctcactctgaggatctcgtaactgtggaagaagttacattaactcaacaacactggaaactctcttcatgaccaactc |
240 |
Q |
| |
|
|||||||||||||||||||| |||| | | |||||| ||| | |||||||| | ||||||||||||||| || ||| |||| ||| || | ||| | |
|
|
| T |
32499951 |
tgcatgatcgaagtagaagaaactcattttagagatctcttaattatggaagaaaatgcattaactcaacaactctagaagctctattcctggctaaccc |
32499852 |
T |
|
| Q |
241 |
ctcgataaaaccattatctcagctaacaacccctccaaacaatttcacccc |
291 |
Q |
| |
|
|||||||||||| |||||| |||||| | ||||||||||||||||||||| |
|
|
| T |
32499851 |
ctcgataaaacctctatctcggctaac-atccctccaaacaatttcacccc |
32499802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 28 - 155
Target Start/End: Original strand, 18282192 - 18282319
Alignment:
| Q |
28 |
aaccacaatatcctcaaccactccacacaactctttatcaaacaacacaaccgcctccttcatgtgaatcggttggcacgttcttaggtctaagaaaatt |
127 |
Q |
| |
|
|||| |||| |||||||| |||||| ||||||| ||||||||||| | || ||||| ||||||||| |||||||| || |||||| | ||||||| | |
|
|
| T |
18282192 |
aaccgcaatgtcctcaactgctccacggaactcttgatcaaacaacatagccacctccaccatgtgaattggttggcatgtccttaggccgaagaaaagt |
18282291 |
T |
|
| Q |
128 |
ttggcgatacccatgcatgatcgaagta |
155 |
Q |
| |
|
||||| |||||||||||||||||||||| |
|
|
| T |
18282292 |
ttggcaatacccatgcatgatcgaagta |
18282319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 133 - 290
Target Start/End: Original strand, 15585899 - 15586056
Alignment:
| Q |
133 |
gatacccatgcatgatcgaagtagaagatgctcactctgaggatctcgtaactgtggaagaagttacattaactcaacaacactggaaactctcttcatg |
232 |
Q |
| |
|
||||||||||||||||||||||| || | || |||| | || |||| ||| ||||||||||| | ||||||||||||||| | |||||||||||| |
|
|
| T |
15585899 |
gatacccatgcatgatcgaagtataataagcccactttatgggtctcttaattgtggaagaagatgcattaactcaacaactccaacaactctcttcata |
15585998 |
T |
|
| Q |
233 |
accaactcctcgataaaaccattatctcagctaacaacccctccaaacaatttcaccc |
290 |
Q |
| |
|
|||| |||||||||||| ||||||| | ||| |||||| ||| |||||||||| |
|
|
| T |
15585999 |
ttcaaccactcgataaaacctttatctcgaccaaccgcccctctaaaaaatttcaccc |
15586056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 388
Target Start/End: Complemental strand, 7793765 - 7793724
Alignment:
| Q |
347 |
tcacatgaaggccaaaagatcttaatcttatgaatattcaat |
388 |
Q |
| |
|
|||||||||||||||||||||| | ||||| ||||||||||| |
|
|
| T |
7793765 |
tcacatgaaggccaaaagatctcagtcttacgaatattcaat |
7793724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 5e-60; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 28 - 428
Target Start/End: Original strand, 24125970 - 24126370
Alignment:
| Q |
28 |
aaccacaatatcctcaaccactccacacaactctttatcaaacaacacaaccgcctccttcatgtgaatcggttggcacgttcttaggtctaagaaaatt |
127 |
Q |
| |
|
||||||||| ||||||||| |||||| || |||||||||||||||| | | ||||||| ||||||| ||||||||||||| ||| | | ||||||| | |
|
|
| T |
24125970 |
aaccacaatgtcctcaaccgctccacgcagctctttatcaaacaacttagcagcctcctccatgtgattcggttggcacgtcattaagccaaagaaaagt |
24126069 |
T |
|
| Q |
128 |
ttggcgatacccatgcatgatcgaagtagaagatgctcactctgaggatctcgtaactgtggaagaagttacattaactcaacaacactggaaactctct |
227 |
Q |
| |
|
||| ||||||||||| ||||||||||||||| ||||||||||||||| ||||||| | |||||||| | ||| || ||| | | ||||||||||||| |
|
|
| T |
24126070 |
ctggaaatacccatgcacgatcgaagtagaagaagctcactctgaggatgtcgtaaccgaggaagaagatgcatcaagtcagtagccctggaaactctct |
24126169 |
T |
|
| Q |
228 |
tcatgaccaactcctcgataaaaccattatctcagctaacaacccctccaaacaatttcacccccaatgacggcctcccaatatccataggaaaaaaccc |
327 |
Q |
| |
|
||||| ||||| ||| |||||||| || |||| ||||||| ||||| | | |||||||||||||| | ||||||||||||||| |||| || ||||| |
|
|
| T |
24126170 |
tcatggccaacccctaaataaaacctttgtctcggctaacagccccttcgagaaatttcacccccaacgttggcctcccaatatccgtagggaacaaccc |
24126269 |
T |
|
| Q |
328 |
ctc-gcgatgctgattaccatcacatgaaggccaaaagatcttaatcttatgaatattcaataccagacccaattctagtccaaaaactcgaatgatgtc |
426 |
Q |
| |
|
| | | |||||| |||| | |||||||||||||||||||||| | ||| ||||||||||| |||| |||||| || | |||| ||| |||||||||| |
|
|
| T |
24126270 |
cccagtgatgcttatta-cgtcacatgaaggccaaaagatctcggttttacgaatattcaattccaggcccaatcctggcccaacaacctgaatgatgtc |
24126368 |
T |
|
| Q |
427 |
ca |
428 |
Q |
| |
|
|| |
|
|
| T |
24126369 |
ca |
24126370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 28 - 401
Target Start/End: Original strand, 24322574 - 24322945
Alignment:
| Q |
28 |
aaccacaatatcctcaaccactccacacaactctttatcaaacaacacaaccgcctccttcatgtgaatcggttggcacgttcttaggtctaagaaaatt |
127 |
Q |
| |
|
|||||||| |||| |||| |||||| |||||||||||||||||||| | || |||||| ||||||||| ||||| ||||| ||||| ||||||| | |
|
|
| T |
24322574 |
aaccacaaagtccttaacctctccacgcaactctttatcaaacaacatagcctcctcctccatgtgaattggttgacacgtccttagactaaagaaaagt |
24322673 |
T |
|
| Q |
128 |
ttggcgatacccatgcatgatcgaagtagaagatgctcactctgaggatctcgtaactgtggaagaagttacattaactcaacaacactggaaactctct |
227 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||| |||||| | | |||||||| ||||||||||| | |||||||||| | | | | || |||||| |
|
|
| T |
24322674 |
ttcgcgatactcatgcatgatcgaagtagaagaaactcactattcagctctcgtaattgtggaagaagatgcattaactcagtagcccag-aagctctct |
24322772 |
T |
|
| Q |
228 |
tcatgaccaactcctcgataaaaccattatctcagctaacaacccctccaaacaatttcacccccaatgacggcctcccaatatccataggaaaaaaccc |
327 |
Q |
| |
|
||||| | | |||||||||||| |||||| ||||||| ||||||| | |||||||||||| |||| |||| |||||||||||| ||| || || || |
|
|
| T |
24322773 |
tcatgggtagcccctcgataaaacatgtatctcggctaacagcccctccgagcaatttcacccctaatgtcggcttcccaatatccaaagggaacaaacc |
24322872 |
T |
|
| Q |
328 |
ctcgcgatgctgattaccatcacatgaaggccaaaagatcttaatcttatgaatattcaataccagacccaatt |
401 |
Q |
| |
|
| | |||||| ||||||||||||||||||||||||||||| | ||||||||||||||||| | |||||||||| |
|
|
| T |
24322873 |
ccct-gatgcttattaccatcacatgaaggccaaaagatctcagtcttatgaatattcaattcaagacccaatt |
24322945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 53 - 305
Target Start/End: Original strand, 4700615 - 4700866
Alignment:
| Q |
53 |
cacaactctttatcaaacaacacaaccgcctccttcatgtgaatcggttggcacgttcttaggtctaagaaaattttggcgatacccatgcatgatcgaa |
152 |
Q |
| |
|
||||||||||||| |||||||| | | |||||| |||||||||| ||||||| || ||||||| || | ||||| |||||||| ||||||||||||| |
|
|
| T |
4700615 |
cacaactctttattaaacaacaaagacacctcctccatgtgaatcagttggcaagtgcttaggttgaatagaatttgggcgatacatatgcatgatcgaa |
4700714 |
T |
|
| Q |
153 |
gtagaagatgctcactctgaggatctcgtaactgtggaagaagttacattaactcaacaacactggaaactctcttcatgaccaactcctcgataaaacc |
252 |
Q |
| |
|
|||||||| |||| |||||||||||| | |||| | ||||| | ||||||||||||||| |||||| ||||||||||| |||| ||||||||||||| |
|
|
| T |
4700715 |
gtagaagaagctcgctctgaggatcttgcaactattgaagacaatgcattaactcaacaaccctggaagctctcttcatggtcaacccctcgataaaacc |
4700814 |
T |
|
| Q |
253 |
attatctcagctaacaacccctccaaacaatttcacccccaatgacggcctcc |
305 |
Q |
| |
|
||||||| |||| | ||||| | | |||||||||| ||| |||||||||| |
|
|
| T |
4700815 |
tttatctcgactaatagaccctcgaga-aatttcacccacaacgacggcctcc |
4700866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 127 - 291
Target Start/End: Complemental strand, 10950256 - 10950092
Alignment:
| Q |
127 |
tttggcgatacccatgcatgatcgaagtagaagatgctcactctgaggatctcgtaactgtggaagaagttacattaactcaacaacactggaaactctc |
226 |
Q |
| |
|
|||||| ||| |||||||||||||||||| |||| ||||||| ||| ||||| |||||||||||| | | | || ||||||| |||| |||||| |||| |
|
|
| T |
10950256 |
tttggcaatatccatgcatgatcgaagtaaaagaagctcactttgatgatcttgtaactgtggaaaaggatgcaataactcagcaactctggaagctcta |
10950157 |
T |
|
| Q |
227 |
ttcatgaccaactcctcgataaaaccattatctcagctaacaacccctccaaacaatttcacccc |
291 |
Q |
| |
|
||||||| ||| ||||||||||||| ||||||| | | ||| ||||||| || ||||||||||| |
|
|
| T |
10950156 |
ttcatgattaacccctcgataaaacctttatctcggttgacagcccctccgaaaaatttcacccc |
10950092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 127 - 291
Target Start/End: Complemental strand, 10958261 - 10958097
Alignment:
| Q |
127 |
tttggcgatacccatgcatgatcgaagtagaagatgctcactctgaggatctcgtaactgtggaagaagttacattaactcaacaacactggaaactctc |
226 |
Q |
| |
|
|||||| ||| |||||||||||||||||| |||| ||||||| ||| ||||| |||||||||||| | | | || ||||||| |||| |||||| |||| |
|
|
| T |
10958261 |
tttggcaatatccatgcatgatcgaagtaaaagaagctcactttgatgatcttgtaactgtggaaaaggatgcaataactcagcaactctggaagctcta |
10958162 |
T |
|
| Q |
227 |
ttcatgaccaactcctcgataaaaccattatctcagctaacaacccctccaaacaatttcacccc |
291 |
Q |
| |
|
||||||| ||| ||||||||||||| ||||||| | | ||| ||||||| || ||||||||||| |
|
|
| T |
10958161 |
ttcatgattaacccctcgataaaacctttatctcggttgacagcccctccgaaaaatttcacccc |
10958097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 59 - 231
Target Start/End: Original strand, 140279 - 140450
Alignment:
| Q |
59 |
tctttatcaaacaacacaaccgcctccttcatgtgaatcggttggcacgttcttaggtctaagaaaattttggcgatacccatgcatgatcgaagtagaa |
158 |
Q |
| |
|
||||||||||||| || | ||||||||| |||| |||||||||| |||| |||| || |||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
140279 |
tctttatcaaacatcatagccgcctcctctatgtaaatcggttgg-acgtcattagacaaaataaaagtttggtgatacccatgcatgatcgaagtagaa |
140377 |
T |
|
| Q |
159 |
gatgctcactctgaggatctcgtaactgtggaagaagttacattaactcaacaacactggaaactctcttcat |
231 |
Q |
| |
|
|| ||||||||| |||||| | || ||||||||||| | ||||||||||||| |||||| |||||||||| |
|
|
| T |
140378 |
gaagctcactctaaggatcacttagctgtggaagaaaatgcattaactcaacagtcctggaagctctcttcat |
140450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 28 - 252
Target Start/End: Original strand, 19278121 - 19278345
Alignment:
| Q |
28 |
aaccacaatatcctcaaccactccacacaactctttatcaaacaacacaaccgcctccttcatgtgaatcggttggcacgttcttaggtctaagaaaatt |
127 |
Q |
| |
|
||||||||| ||||||||| | ||| || |||||||| |||||||| | ||||||||| |||||||||||||||||||||||||| | | | ||||| | |
|
|
| T |
19278121 |
aaccacaatgtcctcaaccgtttcacgcagctctttattaaacaacatagccgcctcctccatgtgaatcggttggcacgttcttaagccaatgaaaaat |
19278220 |
T |
|
| Q |
128 |
ttggcgatacccatgcatgatcgaagtagaagatgctcactctgaggatctcgtaactgtggaagaagttacattaactcaacaacactggaaactctct |
227 |
Q |
| |
|
||||| ||||||||||| |||| |||||||||| ||||||| |||||||| |||||||| |||||||| | |||||||||| || | |||||| |||| | |
|
|
| T |
19278221 |
ttggcaatacccatgcacgatcaaagtagaagaagctcactatgaggatcccgtaactgaggaagaagatgcattaactcagcagccctggaagctctat |
19278320 |
T |
|
| Q |
228 |
tcatgaccaactcctcgataaaacc |
252 |
Q |
| |
|
||||| | ||| |||| |||||||| |
|
|
| T |
19278321 |
tcatggctaacccctcaataaaacc |
19278345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 246 - 426
Target Start/End: Original strand, 19279734 - 19279914
Alignment:
| Q |
246 |
taaaaccattatctcagctaacaacccctccaaacaatttcacccccaatgacggcctcccaatatccataggaaaaaacccctcgcgatgctgattacc |
345 |
Q |
| |
|
||||||| ||||||| ||||||| ||||||| | |||||||||||| || | ||| |||| |||||| | | || |||||||| ||||||| |||||| |
|
|
| T |
19279734 |
taaaacctttatctcggctaacagcccctccgagcaatttcacccctaacgtcggtctcctaatatctgcatggaacaacccctcacgatgcttattacc |
19279833 |
T |
|
| Q |
346 |
atcacatgaaggccaaaagatcttaatcttatgaatattcaataccagacccaattctagtccaaaaactcgaatgatgtc |
426 |
Q |
| |
|
||||||||||||||||||||||| | ||||| ||||||||||| | || || ||||| | |||||||| ||||||||||| |
|
|
| T |
19279834 |
atcacatgaaggccaaaagatctcagtcttacgaatattcaattcaaggccatattctggcccaaaaacccgaatgatgtc |
19279914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 31 - 156
Target Start/End: Original strand, 47680075 - 47680199
Alignment:
| Q |
31 |
cacaatatcctcaaccactccacacaactctttatcaaacaacacaaccgcctccttcatgtgaatcggttggcacgttcttaggtctaagaaaattttg |
130 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||| | ||| || | ||| ||||||||||||||| | ||| || | || |||| ||| |
|
|
| T |
47680075 |
cacaatgtcctcaaccgctccacacaactctttatcaaacaacatagtcgcatcttgcatatgaatcggttggcacatcctttgg-ccaaaaaaacttta |
47680173 |
T |
|
| Q |
131 |
gcgatacccatgcatgatcgaagtag |
156 |
Q |
| |
|
||||||||||||||||| ||||||| |
|
|
| T |
47680174 |
acgatacccatgcatgatagaagtag |
47680199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 289
Target Start/End: Original strand, 32802797 - 32802905
Alignment:
| Q |
181 |
taactgtggaagaagttacattaactcaacaacactggaaactctcttcatgaccaactcctcgataaaaccattatctcagctaacaacccctccaaac |
280 |
Q |
| |
|
|||| |||||||||| | ||||| ||||||| || || |||| |||||| |||| ||||||||||||| |||||| ||||||||||||| ||| |
|
|
| T |
32802797 |
taaccgtggaagaagatgcattagctcaacagtcctaaaagctcttttcatggtcaacccctcgataaaacctctatctcgtctaacaacccctctgaac |
32802896 |
T |
|
| Q |
281 |
aatttcacc |
289 |
Q |
| |
|
||||||||| |
|
|
| T |
32802897 |
aatttcacc |
32802905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 56 - 388
Target Start/End: Complemental strand, 23808826 - 23808494
Alignment:
| Q |
56 |
aactctttatcaaacaacacaaccgcctccttcatgtgaatcggttggcacgttcttaggtctaagaaaattttggcgatacccatgcatgatcgaagta |
155 |
Q |
| |
|
||||||||||||||||||| | || || | |||||||||| ||||||| || || || | |||||| |||| ||||| |||||||| |||||||| |
|
|
| T |
23808826 |
aactctttatcaaacaacatagaagcatcatccatgtgaatcagttggcatgtcttttggccaaagaaaggtttgatgatactcatgcatggtcgaagta |
23808727 |
T |
|
| Q |
156 |
gaagatgctcactctgaggatctcgtaactgtggaagaagttacattaactcaacaacactggaaactctcttcatgaccaactcctcgataaaaccatt |
255 |
Q |
| |
|
||| | |||||| |||||| | | ||||||||||||||| | |||||||||||||| ||||||||||||| ||||| ||||| |||||| | |
|
|
| T |
23808726 |
gaataagctcacgttgaggaccccttaactgtggaagaagatgtattaactcaacaacttgaaaaactctcttcatagccaaccactcgacaaaacctct |
23808627 |
T |
|
| Q |
256 |
atctcagctaacaacccctccaaacaatttcacccccaatgacggcctcccaatatccataggaaaaaacccctcgcgatgctgattaccatcacatgaa |
355 |
Q |
| |
|
|| || |||||| |||||| || ||| ||||||||||| | | ||| |||||||| ||| || ||| || | ||||||| ||||||||||| |||| |
|
|
| T |
23808626 |
atatccactaacagcccctctaagcaaattcacccccaacgccaaccttccaatatctgaagggaacaactccccacgatgcttattaccatcacgtgaa |
23808527 |
T |
|
| Q |
356 |
ggccaaaagatcttaatcttatgaatattcaat |
388 |
Q |
| |
|
||||||||||| ||||||| |||||||||| |
|
|
| T |
23808526 |
ggccaaaagataccaatcttaataatattcaat |
23808494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 48 - 136
Target Start/End: Complemental strand, 25706611 - 25706523
Alignment:
| Q |
48 |
ctccacacaactctttatcaaacaacacaaccgcctccttcatgtgaatcggttggcacgttcttaggtctaagaaaattttggcgata |
136 |
Q |
| |
|
|||||| || ||||||||||||||||| | ||| ||||| ||||||||||||||||||||||||||| | ||||||||||||| |||| |
|
|
| T |
25706611 |
ctccacgcagctctttatcaaacaacatagccgtctcctccatgtgaatcggttggcacgttcttagaccaaagaaaattttggtgata |
25706523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 56461271 - 56461225
Alignment:
| Q |
28 |
aaccacaatatcctcaaccactccacacaactctttatcaaacaaca |
74 |
Q |
| |
|
||||||||| || |||||| |||||| |||||||||||||||||||| |
|
|
| T |
56461271 |
aaccacaatgtcttcaaccgctccacgcaactctttatcaaacaaca |
56461225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 250
Target Start/End: Original strand, 41680464 - 41680571
Alignment:
| Q |
140 |
atgcatgatcgaagtagaagatgctcactctgaggatctcgtaactgtggaagaagttacattaactcaacaacactggaaactctcttcatgaccaact |
239 |
Q |
| |
|
||||| |||| |||||||||| ||||||| |||||| | ||| | ||||||||| | ||||||||||||| || ||||||||||||| ||||| |
|
|
| T |
41680464 |
atgcacgatcaaagtagaagaagctcact---aggatcccttaattttggaagaagatgttttaactcaacaacccttacaactctcttcatggccaacc |
41680560 |
T |
|
| Q |
240 |
cctcgataaaa |
250 |
Q |
| |
|
||||||||||| |
|
|
| T |
41680561 |
cctcgataaaa |
41680571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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