View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_233 (Length: 266)
Name: NF9839A_low_233
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_233 |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 9 - 192
Target Start/End: Original strand, 32464679 - 32464862
Alignment:
| Q |
9 |
agttaaatgggtttacggctgatttacattctttatcttgtatacctgtatttgttggtaacaatctcgattactttgactcggagaagaagatgcaaat |
108 |
Q |
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| T |
32464679 |
agttaaatgggtttatggctgatttacattctttatcttgtataccggtatttgttggcagcaatctcggttactttgactcggagaagaagatgcaaat |
32464778 |
T |
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| Q |
109 |
tctaagtattctcatgacattatgtcaagtcgtcatagtggaaatggacttacttctattcttgttgacaacaatgagtggagg |
192 |
Q |
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| T |
32464779 |
tctaagtattctcatgacattatgtcaagtcgtcgtagtggaaatggacttacttctattcttgttgacaacaatgagtggagg |
32464862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 185 - 257
Target Start/End: Original strand, 32465782 - 32465854
Alignment:
| Q |
185 |
agtggagggagtgtgtaatatgcatagtgttgttttttcttattttgttgctcatttcaaggcacatattgtt |
257 |
Q |
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| T |
32465782 |
agtggagggagtgtgtaatatgcatagtgttgttttttcttattttgttgctcatttcaaagcacatattgtt |
32465854 |
T |
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