View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_237 (Length: 262)
Name: NF9839A_low_237
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_237 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 14 - 256
Target Start/End: Complemental strand, 30408396 - 30408154
Alignment:
| Q |
14 |
acatcatcacagcaacaacaaaaccagtacctggtttcgtaggagcttgcgtgtgctcatcgatccaccccttgaataccctaccaaatccacgttcatc |
113 |
Q |
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| T |
30408396 |
acatcatcacagcaacaacaaaaccagtacctggtttcgtaggagcttgcatgtgctcatcgatccaccccttgaataccctaccaaatccacgttcatc |
30408297 |
T |
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| Q |
114 |
gagttcaccacttggatgaaagtttcttgtcgaagtttttacctcattgaatgtgaaacacttcaaattgttggattgtaatatctcaccctcagtcctt |
213 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30408296 |
gagttcaccacttggatgaaagtttcttgtcgcagtttttacctcattgaatgtgaaacacttcaaattgttggattgtaatatctcaccctcagtcctt |
30408197 |
T |
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| Q |
214 |
gaagttagcagaacagttgaagaggataccttgttgctcaaac |
256 |
Q |
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| T |
30408196 |
gaagttagcagaacagttgaagaggataccttgttgctcaaac |
30408154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 22 - 256
Target Start/End: Complemental strand, 30411312 - 30411078
Alignment:
| Q |
22 |
acagcaacaacaaaaccagtacctggtttcgtaggagcttgcgtgtgctcatcgatccaccccttgaataccctaccaaatccacgttcatcgagttcac |
121 |
Q |
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| T |
30411312 |
acagcaacaacataaccagtaccttgtttagtaggagctagcgtgtgctcatcgatccaccccttaaagacactaccaaacccacgttcatccacttgac |
30411213 |
T |
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| Q |
122 |
cacttggatgaaagtttcttgtcgaagtttttacctcattgaatgtgaaacacttcaaattgttggattgtaatatctcaccctcagtccttgaagttag |
221 |
Q |
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| T |
30411212 |
cgcttggatgaaagtacgtcgtagcagtttttagctcattgaatgtgaaacacttcaaattgttgcattgtaatatctcaccctcagtctttgaagttag |
30411113 |
T |
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| Q |
222 |
cagaacagttgaagaggataccttgttgctcaaac |
256 |
Q |
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| T |
30411112 |
aagcacagatgaagaggatgccttgttgcttaaac |
30411078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 22 - 212
Target Start/End: Complemental strand, 30421426 - 30421236
Alignment:
| Q |
22 |
acagcaacaacaaaaccagtacctggtttcgtaggagcttgcgtgtgctcatcgatccaccccttgaataccctaccaaatccacgttcatcgagttcac |
121 |
Q |
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||||||| ||||||||||||||||||||| ||||||||| | ||||||||||||||||| ||||| ||||| | ||||||||||| ||| | | || |
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| T |
30421426 |
acagcaataacaaaaccagtacctggtttagtaggagctagtgtgtgctcatcgatccaacccttaaatacacaaccaaatccaccttcgccaatcatac |
30421327 |
T |
|
| Q |
122 |
cacttggatgaaagtttcttgtcgaagtttttacctcattgaatgtgaaacacttcaaattgttggattgtaatatctcaccctcagtcct |
212 |
Q |
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| |||| ||||||| ||||||| | | |||||||||||| |||||||||||||||| ||| ||||| |||||||||||||| ||||| |
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| T |
30421326 |
tatctggacgaaagttccttgtcgcggctcttacctcattgatagtgaaacacttcaaatagtttgattgcaatatctcaccctcggtcct |
30421236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 221
Target Start/End: Complemental strand, 30404558 - 30404369
Alignment:
| Q |
32 |
caaaaccagtacctggtttcgtaggagcttgcgtgtgctcatcgatccaccccttgaataccctaccaaatccacgttcatcgagttcaccacttggatg |
131 |
Q |
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|||||||||||||| |||| || || ||| | ||||||||||||||||| ||||| ||||| | ||||||||||| || | | || | |||||| |
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| T |
30404558 |
caaaaccagtaccttgtttagtcggggctagtgtgtgctcatcgatccaacccttaaatacacaaccaaatccacctttgccaatcatactatctggatg |
30404459 |
T |
|
| Q |
132 |
aaagtttcttgtcgaagtttttacctcattgaatgtgaaacacttcaaattgttggattgtaatatctcaccctcagtccttgaagttag |
221 |
Q |
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|||||| ||||| | | | ||||||| |||| ||||||||| |||||||||||||| | |||| |||| |||||||||| |||||||| |
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| T |
30404458 |
aaagttccttgttgcggctcttacctcgttgatagtgaaacacgtcaaattgttggatcgcaatacctcatcctcagtcctagaagttag |
30404369 |
T |
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