View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9839A_low_239 (Length: 261)

Name: NF9839A_low_239
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9839A_low_239
NF9839A_low_239
[»] chr2 (8 HSPs)
chr2 (21-261)||(37210117-37210356)
chr2 (123-260)||(29927697-29927839)
chr2 (198-259)||(12892835-12892896)
chr2 (188-257)||(35494924-35494993)
chr2 (123-181)||(38342377-38342433)
chr2 (123-181)||(32978970-32979027)
chr2 (188-237)||(6069170-6069219)
chr2 (156-256)||(38283909-38284010)
[»] chr6 (7 HSPs)
chr6 (123-256)||(32549448-32549587)
chr6 (122-222)||(1038296-1038402)
chr6 (194-232)||(33900158-33900196)
chr6 (188-256)||(11004259-11004327)
chr6 (188-259)||(214777-214848)
chr6 (220-261)||(1054991-1055032)
chr6 (188-256)||(4332978-4333046)
[»] chr7 (3 HSPs)
chr7 (123-260)||(24972898-24973041)
chr7 (122-256)||(33487227-33487367)
chr7 (204-256)||(41639744-41639796)
[»] scaffold0067 (1 HSPs)
scaffold0067 (188-260)||(15328-15397)
[»] chr3 (5 HSPs)
chr3 (188-256)||(40362028-40362096)
chr3 (124-181)||(1700058-1700113)
chr3 (187-233)||(39028174-39028220)
chr3 (188-240)||(29570389-29570441)
chr3 (188-224)||(31984431-31984467)
[»] chr4 (5 HSPs)
chr4 (187-256)||(19401742-19401811)
chr4 (145-256)||(47533727-47533845)
chr4 (188-260)||(53711723-53711795)
chr4 (119-181)||(24894658-24894719)
chr4 (188-260)||(55520978-55521050)
[»] chr1 (7 HSPs)
chr1 (188-258)||(39939236-39939306)
chr1 (188-256)||(44686300-44686368)
chr1 (187-258)||(45962249-45962320)
chr1 (202-260)||(28190525-28190583)
chr1 (188-256)||(37543816-37543883)
chr1 (188-249)||(28651004-28651065)
chr1 (212-256)||(28190587-28190631)
[»] chr8 (5 HSPs)
chr8 (188-261)||(32703262-32703335)
chr8 (187-261)||(37165161-37165235)
chr8 (188-261)||(9261241-9261314)
chr8 (188-256)||(37973412-37973480)
chr8 (198-260)||(34646253-34646315)
[»] chr5 (1 HSPs)
chr5 (121-177)||(39043523-39043578)


Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 21 - 261
Target Start/End: Original strand, 37210117 - 37210356
Alignment:
Q  21 gtaatgggaactgatacatagactaatcaccgagaaattagtctttgaaagaccaaaacttcattggcaaattgtgttggcagtaatgtggaatcaacat 120  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37210117 gtaatgggaacttatacatagactaattaccgagaaattagtctttgaaagaccaaaacttcattggcaaattctgttggcagtaatgtggaatcaacat 37210216  T
Q  121 ttgaaaattgatgttcccacatcaaaaggtcgctaggaaacaccacgaaattaccaatataccttcattaactgccgatgaattttaaccggcggtagtt 220  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | ||||||    
T  37210217 ttgaaaattgatgttcccacatc-aaaggttgctaggaaacaccacgaaattaccaatataacttcattaactgccgatcaattttaaccgaccgtagtt 37210315  T
Q  221 aactaccaatgaaaattggggttaaatttgtcatttcatga 261  Q
     ||||||||||||||||||||||||||||||||||||||||    
T  37210316 cactaccaatgaaaattggggttaaatttgtcatttcatga 37210356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 123 - 260
Target Start/End: Original strand, 29927697 - 29927839
Alignment:
Q  123 gaaaattgatgttcccacatcaaaaggtcgctaggaaacaccacgaaattaccaatataccttcat-------taactgccgatgaattttaaccggcgg 215  Q
    |||| ||| ||||||||||||||| ||| | |||||||||||||||||||||||||||| | ||||       ||||||| |||| |||||||||| ||     
T  29927697 gaaatttgttgttcccacatcaaa-ggttgataggaaacaccacgaaattaccaatataacctcatcggcagttaactgctgatggattttaaccgacga 29927795  T
Q  216 tagttaactaccaatgaaaattggggttaaatttgtcatttcatg 260  Q
    ||||||||| || |||||| |||||||||||||| ||||||||||    
T  29927796 tagttaact-ccgatgaaatttggggttaaatttatcatttcatg 29927839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 259
Target Start/End: Complemental strand, 12892896 - 12892835
Alignment:
Q  198 atgaattttaaccggcggtagttaactaccaatgaaaattggggttaaatttgtcatttcat 259  Q
    |||||||||||||| ||||||||||||  | | ||||||||||||||||||| |||||||||    
T  12892896 atgaattttaaccgacggtagttaactgtcgacgaaaattggggttaaatttatcatttcat 12892835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 257
Target Start/End: Complemental strand, 35494993 - 35494924
Alignment:
Q  188 ttaactgccgatgaattttaaccggcggtagttaactaccaatgaaaattggggttaaatttgtcatttc 257  Q
    ||||||||||||||||||||||||  |||| ||||||| | |||||| ||| | ||||||||||||||||    
T  35494993 ttaactgccgatgaattttaaccgatggtaattaactatcgatgaaatttgagattaaatttgtcatttc 35494924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 181
Target Start/End: Complemental strand, 38342433 - 38342377
Alignment:
Q  123 gaaaattgatgttcccacatcaaaaggtcgctaggaaacaccacgaaattaccaatata 181  Q
    |||||||| ||||||||| |||||  || |||| |||||||||||||||||||||||||    
T  38342433 gaaaattgttgttcccacgtcaaa--gttgctatgaaacaccacgaaattaccaatata 38342377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 32978970 - 32979027
Alignment:
Q  123 gaaaattgatgttcccacatcaaaaggtcgctaggaaacaccacgaaattaccaatata 181  Q
    |||||||| ||||||||||||| | ||| ||||||||||||||| |||||| |||||||    
T  32978970 gaaaattgttgttcccacatcata-ggttgctaggaaacaccacaaaattatcaatata 32979027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 6069219 - 6069170
Alignment:
Q  188 ttaactgccgatgaattttaaccggcggtagttaactaccaatgaaaatt 237  Q
    |||||||||||||||||||||||| ||||| |||||| || || ||||||    
T  6069219 ttaactgccgatgaattttaaccgacggtaattaactgccgataaaaatt 6069170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 256
Target Start/End: Complemental strand, 38284010 - 38283909
Alignment:
Q  156 ggaaacaccacgaaattaccaatataccttcattaactgccgatgaattttaaccggcggtagttaactacc-aatgaaaattggggttaaatttgtcat 254  Q
    ||||||||||| ||| |||||| |||   |||| ||||  |||||||||||||||  |||||||||||| || ||  ||||||| |||||| ||||||||    
T  38284010 ggaaacaccactaaaataccaaaataatctcatcaactttcgatgaattttaaccaacggtagttaactgccgaagaaaaattgaggttaagtttgtcat 38283911  T
Q  255 tt 256  Q
    ||    
T  38283910 tt 38283909  T

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Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 123 - 256
Target Start/End: Complemental strand, 32549587 - 32549448
Alignment:
Q  123 gaaaattgatgttcccacatcaaaaggtcgctaggaaacaccacgaaattaccaatataccttcat-------taactgccgatgaattttaaccggcgg 215  Q
    |||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||| ||||||       ||||||||||||||||||||||| ||     
T  32549587 gaaaattgatgttcccacatcaaaagtt-gctatgaaacaccacgaaattaccaatataacttcatcgacaattaactgccgatgaattttaaccgacga 32549489  T
Q  216 tagttaactaccaatgaaaattggggttaaatttgtcattt 256  Q
    |||||||||||| |||||| ||||||||||| |||||||||    
T  32549488 tagttaactaccgatgaaatttggggttaaacttgtcattt 32549448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 1038296 - 1038402
Alignment:
Q  122 tgaaaattgatgttcccacatcaaaaggtcgctaggaaacaccacgaaattaccaatata---ccttca----ttaactgccgatgaattttaaccggcg 214  Q
    |||||||||||||||||||||| |||||| | || ||||||| || ||||||||||||||   | ||||    |||||||||||||||||||| ||| ||    
T  1038296 tgaaaattgatgttcccacatc-aaaggttgttatgaaacacaacaaaattaccaatataactctttcagtagttaactgccgatgaattttatccgacg 1038394  T
Q  215 gtagttaa 222  Q
    ||||||||    
T  1038395 gtagttaa 1038402  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 232
Target Start/End: Complemental strand, 33900196 - 33900158
Alignment:
Q  194 gccgatgaattttaaccggcggtagttaactaccaatga 232  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  33900196 gccgatgaattttaaccggcggcagttaactaccaatga 33900158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 256
Target Start/End: Original strand, 11004259 - 11004327
Alignment:
Q  188 ttaactgccgatgaattttaaccggcggtagttaactaccaatgaaaattggggttaaatttgtcattt 256  Q
    |||||||||| || |||| |||||||||| |||||||||  ||| || ||||||||||| |||||||||    
T  11004259 ttaactgccgttggatttaaaccggcggttgttaactacggatggaatttggggttaaacttgtcattt 11004327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 259
Target Start/End: Complemental strand, 214848 - 214777
Alignment:
Q  188 ttaactgccgatgaattttaaccggcggtagttaactaccaatgaaaattggggttaaatttgtcatttcat 259  Q
    ||||| |||| |||||||||||||  ||||| |||||||| ||| || |||  |||||||||||||||||||    
T  214848 ttaaccgccgttgaattttaaccgatggtagctaactaccgatgtaatttgaagttaaatttgtcatttcat 214777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 261
Target Start/End: Complemental strand, 1055032 - 1054991
Alignment:
Q  220 taactaccaatgaaaattggggttaaatttgtcatttcatga 261  Q
    ||||| ||||| ||||||||| ||||||||||||||||||||    
T  1055032 taactgccaataaaaattgggattaaatttgtcatttcatga 1054991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 256
Target Start/End: Complemental strand, 4333046 - 4332978
Alignment:
Q  188 ttaactgccgatgaattttaaccggcggtagttaactaccaatgaaaattggggttaaatttgtcattt 256  Q
    ||||||| ||||||||||||||||    || ||||||||| ||||||||||  ||||||||||| ||||    
T  4333046 ttaactgtcgatgaattttaaccgataataattaactaccgatgaaaattgacgttaaatttgttattt 4332978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 123 - 260
Target Start/End: Original strand, 24972898 - 24973041
Alignment:
Q  123 gaaaattgatgttcccacatcaaaaggtcgctaggaaacaccacgaaattaccaatataccttcat-------taactgccgatgaattttaaccggcgg 215  Q
    |||||||| ||||||||||||||| ||   |||||||||| |||||||||||||||||| | ||||       |||||||||||| ||||||||||||||    
T  24972898 gaaaattgttgttcccacatcaaaggggt-ctaggaaacatcacgaaattaccaatataacatcatcgacagttaactgccgatggattttaaccggcgg 24972996  T
Q  216 tagttaactaccaatgaaaattggggttaaatttgtcatttcatg 260  Q
    |||||||||| | ||| ||||||| ||||||||||||||||||||    
T  24972997 tagttaactatcgatggaaattggagttaaatttgtcatttcatg 24973041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 256
Target Start/End: Complemental strand, 33487367 - 33487227
Alignment:
Q  122 tgaaaattgatgttcccacatcaaaaggtcgctaggaaacaccacgaaattaccaatata--cct----tca-ttaactgccgatgaattttaaccggcg 214  Q
    ||||||||||||||||| ||||||| | | |||| ||||||||||||||||| |||||||  |||     || ||||||||||||||||||||||||  |    
T  33487367 tgaaaattgatgttcccgcatcaaa-gattgctatgaaacaccacgaaattatcaatataaccctatgggcagttaactgccgatgaattttaaccgctg 33487269  T
Q  215 gtagttaactaccaatgaaaattggggttaaatttgtcattt 256  Q
     |||||||||||| ||  || |||  ||||||||||| ||||    
T  33487268 atagttaactaccgatagaatttgaagttaaatttgttattt 33487227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 256
Target Start/End: Original strand, 41639744 - 41639796
Alignment:
Q  204 tttaaccggcggtagttaactaccaatgaaaattggggttaaatttgtcattt 256  Q
    ||||||||  |||||||||||  | ||| ||||||||||||||||||||||||    
T  41639744 tttaaccgatggtagttaactgtcgatggaaattggggttaaatttgtcattt 41639796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 188 - 260
Target Start/End: Original strand, 15328 - 15397
Alignment:
Q  188 ttaactgccgatgaattttaaccggcggtagttaactaccaatgaaaattggggttaaatttgtcatttcatg 260  Q
    ||||||||||| ||||||||||||| |||||||||||    ||||||||||||||||||||||||||||||||    
T  15328 ttaactgccgacgaattttaaccggtggtagttaactg---atgaaaattggggttaaatttgtcatttcatg 15397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 256
Target Start/End: Original strand, 40362028 - 40362096
Alignment:
Q  188 ttaactgccgatgaattttaaccggcggtagttaactaccaatgaaaattggggttaaatttgtcattt 256  Q
    ||||||| ||||| |||||||||| ||||||||||||| |||||||| |||||||||||||| ||||||    
T  40362028 ttaactgtcgatggattttaaccgacggtagttaactatcaatgaaatttggggttaaatttttcattt 40362096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 1700113 - 1700058
Alignment:
Q  124 aaaattgatgttcccacatcaaaaggtcgctaggaaacaccacgaaattaccaatata 181  Q
    ||||||||||||||||| ||||  ||| |||||||||||| | |||||||||||||||    
T  1700113 aaaattgatgttcccacttcaa--ggttgctaggaaacactatgaaattaccaatata 1700058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 39028174 - 39028220
Alignment:
Q  187 attaactgccgatgaattttaaccggcggtagttaactaccaatgaa 233  Q
    |||||||| |||||||||||||||||||| |||||||| || |||||    
T  39028174 attaactgtcgatgaattttaaccggcggcagttaactgccgatgaa 39028220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 29570389 - 29570441
Alignment:
Q  188 ttaactgccgatgaattttaaccggcggtagttaactaccaatgaaaattggg 240  Q
    |||||||| |||| |||||||||||||||||||| || || | ||||||||||    
T  29570389 ttaactgctgatggattttaaccggcggtagttagctgccgaagaaaattggg 29570441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 31984467 - 31984431
Alignment:
Q  188 ttaactgccgatgaattttaaccggcggtagttaact 224  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  31984467 ttaaccgccgatgaattttaaccggcggcagttaact 31984431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 19401742 - 19401811
Alignment:
Q  187 attaactgccgatgaattttaaccggcggtagttaactaccaatgaaaattggggttaaatttgtcattt 256  Q
    |||||||||||||  |||||||||| |||||||||||| || | ||||||||||||||||||| ||||||    
T  19401742 attaactgccgatagattttaaccgacggtagttaactgccgaagaaaattggggttaaatttatcattt 19401811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 256
Target Start/End: Original strand, 47533727 - 47533845
Alignment:
Q  145 aaaggtcgctaggaaacaccacgaaattaccaatataccttcat-------taactgccgatgaattttaaccggcggtagttaactaccaatgaaaatt 237  Q
    |||||| | ||||||||||||| || ||||||||||| ||||||       | |||||||||||||||| || ||||||||||||| ||| |||||| ||    
T  47533727 aaaggttgttaggaaacaccacaaatttaccaatataacttcatcgacagttgactgccgatgaattttgactggcggtagttaacgaccgatgaaattt 47533826  T
Q  238 ggggttaaatttgtcattt 256  Q
    | |||||||||| ||||||    
T  47533827 gaggttaaatttatcattt 47533845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 260
Target Start/End: Complemental strand, 53711795 - 53711723
Alignment:
Q  188 ttaactgccgatgaattttaaccggcggtagttaactaccaatgaaaattggggttaaatttgtcatttcatg 260  Q
    |||||||  |||||||||||||| ||| || ||||||| |||||||| ||  |||||||||||||||||||||    
T  53711795 ttaactgttgatgaattttaaccagcgataattaactaacaatgaaatttaaggttaaatttgtcatttcatg 53711723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 24894658 - 24894719
Alignment:
Q  119 atttgaaaattgatgttcccacatcaaaaggtcgctaggaaacaccacgaaattaccaatata 181  Q
    ||||||||||||||||||||||||| |||||| |  | |||||||||| ||||||||||||||    
T  24894658 atttgaaaattgatgttcccacatc-aaaggttgtaatgaaacaccacaaaattaccaatata 24894719  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 260
Target Start/End: Complemental strand, 55521050 - 55520978
Alignment:
Q  188 ttaactgccgatgaattttaaccggcggtagttaactaccaatgaaaattggggttaaatttgtcatttcatg 260  Q
    ||||||||||||||||||||||  |||||| |||||||   ||| || |||||| |||| |||||||||||||    
T  55521050 ttaactgccgatgaattttaacttgcggtatttaactattgatgtaatttggggctaaacttgtcatttcatg 55520978  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 258
Target Start/End: Complemental strand, 39939306 - 39939236
Alignment:
Q  188 ttaactgccgatgaattttaaccggcggtagttaactaccaatgaaaattggggttaaatttgtcatttca 258  Q
    |||||||| | ||||||||||||| ||||||||||||||| ||| || || |||||||| |||||||||||    
T  39939306 ttaactgctgctgaattttaaccgacggtagttaactaccgatgtaatttagggttaaacttgtcatttca 39939236  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 256
Target Start/End: Original strand, 44686300 - 44686368
Alignment:
Q  188 ttaactgccgatgaattttaaccggcggtagttaactaccaatgaaaattggggttaaatttgtcattt 256  Q
    |||||||||||||||||||||||||  ||| |||||| || | ||||||||| ||||||||||| ||||    
T  44686300 ttaactgccgatgaattttaaccggatgtaattaactgccgaagaaaattggagttaaatttgttattt 44686368  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 258
Target Start/End: Original strand, 45962249 - 45962320
Alignment:
Q  187 attaactgccgatgaattttaaccggcggtagttaactaccaatgaaaattggggttaaatttgtcatttca 258  Q
    ||||||||||||| |||||||||||||||| ||||||| || |||||||| |  |||||||||  |||||||    
T  45962249 attaactgccgataaattttaaccggcggtcgttaactgcccatgaaaatcgaagttaaatttaccatttca 45962320  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 260
Target Start/End: Complemental strand, 28190583 - 28190525
Alignment:
Q  202 attttaaccggcggtagttaactaccaatgaaaattggggttaaatttgtcatttcatg 260  Q
    ||||||||| |||||||||||||||  |||||| ||| ||||||| |||||||||||||    
T  28190583 attttaaccagcggtagttaactactgatgaaatttgaggttaaacttgtcatttcatg 28190525  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 256
Target Start/End: Original strand, 37543816 - 37543883
Alignment:
Q  188 ttaactgccgatgaattttaaccggcggtagttaactaccaatgaaaattggggttaaatttgtcattt 256  Q
    ||||||||||||| |||| || |||| |||||||||||||||| ||| || ||||||||||| ||||||    
T  37543816 ttaactgccgatggattt-aatcggcagtagttaactaccaataaaatttagggttaaatttttcattt 37543883  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 28651065 - 28651004
Alignment:
Q  188 ttaactgccgatgaattttaaccggcggtagttaactaccaatgaaaattggggttaaattt 249  Q
    ||||||||||||| |||||||||| ||||| |||| | |  |||||||||| ||||||||||    
T  28651065 ttaactgccgatggattttaaccgacggtaattaattgctgatgaaaattgaggttaaattt 28651004  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 256
Target Start/End: Original strand, 28190587 - 28190631
Alignment:
Q  212 gcggtagttaactaccaatgaaaattggggttaaatttgtcattt 256  Q
    |||||||||||||||| |||||| ||| ||||||| |||||||||    
T  28190587 gcggtagttaactaccgatgaaatttgaggttaaacttgtcattt 28190631  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 261
Target Start/End: Original strand, 32703262 - 32703335
Alignment:
Q  188 ttaactgccgatgaattttaaccggcggtagttaactaccaatgaaaattggggttaaatttgtcatttcatga 261  Q
    ||||||||||||  |||||||||| | ||||||||||  |||| |||||||| ||||||||| |||||||||||    
T  32703262 ttaactgccgatagattttaaccgacagtagttaactgtcaataaaaattggcgttaaatttatcatttcatga 32703335  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 261
Target Start/End: Complemental strand, 37165235 - 37165161
Alignment:
Q  187 attaactgccgatgaattttaaccggcggtagttaactaccaatgaaaattggggttaaatttgtcatttcatga 261  Q
    |||||||| |||||  ||||||||||||||| |||||| || | ||||| |||| ||||||||||||||| ||||    
T  37165235 attaactgacgatgggttttaaccggcggtaattaactgccgaagaaaaatgggattaaatttgtcattttatga 37165161  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 261
Target Start/End: Complemental strand, 9261314 - 9261241
Alignment:
Q  188 ttaactgccgatgaattttaaccggcggtagttaactaccaatgaaaattggggttaaatttgtcatttcatga 261  Q
    ||||||| | ||||||||||||||||  || |||||| || | ||||||||||||||||||| |||||| ||||    
T  9261314 ttaactgtcaatgaattttaaccggccctaattaactgccgaagaaaattggggttaaatttatcatttaatga 9261241  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 256
Target Start/End: Complemental strand, 37973480 - 37973412
Alignment:
Q  188 ttaactgccgatgaattttaaccggcggtagttaactaccaatgaaaattggggttaaatttgtcattt 256  Q
    ||||||| |||||||||||||||| ||||||| |||| |  | |||||||| |||||||||| ||||||    
T  37973480 ttaactgtcgatgaattttaaccgacggtagtcaactgctgaagaaaattgaggttaaatttatcattt 37973412  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 260
Target Start/End: Original strand, 34646253 - 34646315
Alignment:
Q  198 atgaattttaaccggcggtagttaactaccaatgaaaattggggttaaatttgtcatttcatg 260  Q
    |||||||| || || |||||||||||| || ||| || ||||| |||||||||||||||||||    
T  34646253 atgaatttaaatcgacggtagttaacttccgatggaatttgggattaaatttgtcatttcatg 34646315  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 39043523 - 39043578
Alignment:
Q  121 ttgaaaattgatgttcccacatcaaaaggtcgctaggaaacaccacgaaattaccaa 177  Q
    ||||||||| ||||||||||||||||| || ||||||||||||||  ||||||||||    
T  39043523 ttgaaaattaatgttcccacatcaaaa-gttgctaggaaacaccataaaattaccaa 39043578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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