View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_24 (Length: 441)
Name: NF9839A_low_24
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 11 - 432
Target Start/End: Original strand, 17740449 - 17740866
Alignment:
| Q |
11 |
tggacatcattaacatatagatatgatctcttatcacgacataatcacaatatgctcctaagagcagaagaaattattactacataattgtcatcttatc |
110 |
Q |
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| T |
17740449 |
tggacatcattaacatatagatatgatctcttatcacgacataatcacaatatgctcctaagagcagaagaaattat-actacataattgtcatcttatc |
17740547 |
T |
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| Q |
111 |
cggagtagtgaatctacaacgactgtcggatcccggagttgcttgaagacaatggaggatggcattgctacttcgagaggggctgtgttcgtgctaggac |
210 |
Q |
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| T |
17740548 |
cggagtagtgaatctacaacgactgtcggatcccgaagttgcttgaagacaatggaggatggcattgctacttcgagaggggctatgttcgtgctaggac |
17740647 |
T |
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| Q |
211 |
tctaatgctcaagtaaatgagggctttaggtgagtcaagagttgaactggaatagataacatacatttcaccaagggtcgaagacctttttgttgtgcga |
310 |
Q |
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| T |
17740648 |
tctaatgctcaagtaaatgagggctttaggtgagtcaagagttgaactggaatagataacatacatttcaccaagggtcgaagacctttttgttgtgcga |
17740747 |
T |
|
| Q |
311 |
caagtgtgagttaattagaaatctcgtattgcttagaaaaatggagttgaacacttaacaaattgaca-gacccataaactcaatgtcataaggattttg |
409 |
Q |
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| T |
17740748 |
caagtgtgag----ttagaaatctcgtattgcttagaaaaatggagttgaacacttaacaaattgacaggacccagaaactcaatgtcataaggattttg |
17740843 |
T |
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| Q |
410 |
gtaaatatgtgatgtccatctca |
432 |
Q |
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| T |
17740844 |
gtaaacatgtgacgtccaactca |
17740866 |
T |
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