View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_241 (Length: 261)
Name: NF9839A_low_241
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_241 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 258
Target Start/End: Original strand, 55080667 - 55080908
Alignment:
| Q |
17 |
gtatgtatccaaaggaacgtgattggtgtgcataaaggaaaaggtggtgagagcaagaaaggggaaacctttacgacagaaatgagatatgatgacattg |
116 |
Q |
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| T |
55080667 |
gtatgtatccaaaggaacgtgattggtgtgcataaaggaaaaggtggtgagagcaagaaaggggaaacctttacgacagaaatgagatatgatgacattg |
55080766 |
T |
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| Q |
117 |
aaatgtaatgggttggtggaattcatgcatttgaaggaactattggtaagtgtttgaagattgttacctggaaagcatgaagtgtatgtggaaatgagtt |
216 |
Q |
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| T |
55080767 |
aaatgtaatgggttggtggaattcatgcatttgaagaaactattggtaagtgtttgaagattgttgcttggaaagaatgaagtgtatgtggaaatgagtt |
55080866 |
T |
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| Q |
217 |
gggtgtgaagatcatggagaatgaagagagtgcctttagtga |
258 |
Q |
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| T |
55080867 |
gggtgtgaagatcatggagaatgaagagagtgcctttagtga |
55080908 |
T |
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