View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9839A_low_242 (Length: 261)

Name: NF9839A_low_242
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9839A_low_242
NF9839A_low_242
[»] scaffold0676 (1 HSPs)
scaffold0676 (9-261)||(1829-2081)
[»] scaffold0004 (2 HSPs)
scaffold0004 (9-261)||(8643-8895)
scaffold0004 (165-250)||(2107-2192)
[»] scaffold0863 (1 HSPs)
scaffold0863 (9-253)||(4276-4520)
[»] scaffold0594 (1 HSPs)
scaffold0594 (9-261)||(3884-4136)
[»] chr7 (9 HSPs)
chr7 (47-250)||(13131215-13131418)
chr7 (71-119)||(2712654-2712702)
chr7 (71-119)||(8009110-8009158)
chr7 (71-119)||(9089048-9089096)
chr7 (71-119)||(11009000-11009048)
chr7 (71-119)||(24737916-24737964)
chr7 (71-119)||(26397137-26397185)
chr7 (71-119)||(26692782-26692830)
chr7 (71-119)||(40049145-40049193)
[»] scaffold0193 (1 HSPs)
scaffold0193 (16-253)||(6589-6825)
[»] chr8 (12 HSPs)
chr8 (9-247)||(20378538-20378775)
chr8 (9-261)||(17263142-17263394)
chr8 (7-250)||(24648684-24648927)
chr8 (63-134)||(22526816-22526887)
chr8 (71-119)||(245642-245690)
chr8 (71-119)||(808762-808810)
chr8 (71-119)||(3355626-3355674)
chr8 (71-119)||(9344933-9344981)
chr8 (71-119)||(13695561-13695609)
chr8 (71-119)||(29080225-29080273)
chr8 (71-119)||(36296756-36296804)
chr8 (71-119)||(44484947-44484995)
[»] scaffold0379 (1 HSPs)
scaffold0379 (7-253)||(1353-1599)
[»] chr5 (21 HSPs)
chr5 (14-253)||(92758-92996)
chr5 (9-241)||(23434130-23434362)
chr5 (9-241)||(23445497-23445729)
chr5 (165-247)||(21613496-21613578)
chr5 (71-119)||(6982886-6982934)
chr5 (71-119)||(9343034-9343082)
chr5 (71-119)||(14037121-14037169)
chr5 (71-119)||(14561787-14561835)
chr5 (71-119)||(22683197-22683245)
chr5 (71-119)||(23303358-23303406)
chr5 (71-119)||(23369015-23369063)
chr5 (71-119)||(23703859-23703907)
chr5 (71-119)||(24574152-24574200)
chr5 (71-119)||(24591795-24591843)
chr5 (71-119)||(24814993-24815041)
chr5 (71-119)||(24820609-24820657)
chr5 (71-119)||(27467241-27467289)
chr5 (71-119)||(30231160-30231208)
chr5 (71-119)||(36586249-36586297)
chr5 (71-119)||(39494619-39494667)
chr5 (71-119)||(42049859-42049907)
[»] scaffold0396 (1 HSPs)
scaffold0396 (9-180)||(10443-10614)
[»] scaffold0084 (1 HSPs)
scaffold0084 (14-253)||(41615-41854)
[»] scaffold0810 (1 HSPs)
scaffold0810 (7-250)||(718-961)
[»] chr1 (6 HSPs)
chr1 (21-241)||(36137794-36138014)
chr1 (71-119)||(7511047-7511095)
chr1 (22-82)||(22461035-22461095)
chr1 (71-119)||(36243433-36243481)
chr1 (71-119)||(38098860-38098908)
chr1 (71-119)||(51652877-51652925)
[»] chr3 (21 HSPs)
chr3 (167-253)||(12954746-12954832)
chr3 (165-246)||(17220164-17220245)
chr3 (8-115)||(17251696-17251803)
chr3 (21-114)||(18137942-18138035)
chr3 (165-251)||(18137805-18137891)
chr3 (71-119)||(4747551-4747599)
chr3 (71-119)||(5543977-5544025)
chr3 (71-119)||(5872657-5872705)
chr3 (71-119)||(11279356-11279404)
chr3 (71-119)||(12244514-12244562)
chr3 (71-119)||(12293146-12293194)
chr3 (71-119)||(13125522-13125570)
chr3 (71-119)||(14469452-14469500)
chr3 (71-119)||(16426115-16426163)
chr3 (71-119)||(23761129-23761177)
chr3 (71-119)||(24390475-24390523)
chr3 (71-119)||(24663702-24663750)
chr3 (71-119)||(28321194-28321242)
chr3 (71-119)||(38198603-38198651)
chr3 (71-119)||(39375917-39375965)
chr3 (71-119)||(41687481-41687529)
[»] chr2 (8 HSPs)
chr2 (14-253)||(18941612-18941852)
chr2 (71-119)||(9769737-9769785)
chr2 (71-119)||(9904547-9904595)
chr2 (71-119)||(10270774-10270822)
chr2 (71-119)||(11402150-11402198)
chr2 (71-119)||(27225218-27225266)
chr2 (71-119)||(39177072-39177120)
chr2 (71-119)||(43349191-43349239)
[»] scaffold0203 (1 HSPs)
scaffold0203 (194-253)||(23626-23685)
[»] scaffold0217 (1 HSPs)
scaffold0217 (24-247)||(10523-10746)
[»] scaffold0324 (1 HSPs)
scaffold0324 (195-253)||(11518-11576)
[»] scaffold0133 (1 HSPs)
scaffold0133 (71-119)||(34948-34996)
[»] scaffold0105 (1 HSPs)
scaffold0105 (71-119)||(43951-43999)
[»] chr6 (8 HSPs)
chr6 (71-119)||(3665214-3665262)
chr6 (71-119)||(12723804-12723852)
chr6 (71-119)||(16952793-16952841)
chr6 (71-119)||(25791502-25791550)
chr6 (71-119)||(26029207-26029255)
chr6 (71-119)||(26868590-26868638)
chr6 (71-119)||(27376580-27376628)
chr6 (71-119)||(27466937-27466985)
[»] chr4 (5 HSPs)
chr4 (71-119)||(454411-454459)
chr4 (71-119)||(10747558-10747606)
chr4 (71-119)||(10961327-10961375)
chr4 (71-119)||(27660459-27660507)
chr4 (71-119)||(36022137-36022185)


Alignment Details
Target: scaffold0676 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: scaffold0676
Description:

Target: scaffold0676; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 9 - 261
Target Start/End: Original strand, 1829 - 2081
Alignment:
Q  9 gagaagaaaacaggaatgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtaggat 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1829 gagatgaaaacaggaatgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtaggat 1928  T
Q  109 caatcagaatcttctatgtttcctccagctttacaacattcttgtcatacatatgcgctctaacccagaagtgcctaacaagtgtcttgtatgttggacc 208  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1929 caatcagaatcttctctgtttcctccagctttacaacattcttgtcatacatatgcgctctaacccagaagtgcctaacaagtgtcttgtatgttggacc 2028  T
Q  209 attcaacatcttgaagtattccatgagaccttgtgcttcgtagtaccctctga 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2029 attcaacatcttgaagtattccatgagaccttgtgcttcgtagtaccctctga 2081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 149; Significance: 9e-79; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 9 - 261
Target Start/End: Complemental strand, 8895 - 8643
Alignment:
Q  9 gagaagaaaacaggaatgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtaggat 108  Q
    |||| |||||||| |||||  ||||||| |||||||||||||||||||  |||||||||||| ||||||||||| |  || |||||||||||||| ||||    
T  8895 gagatgaaaacagaaatgcttatgatgcttgacctgatttcagtgcatacaaatggttctaaccccatttcttcacgagattttccctccatagttggat 8796  T
Q  109 caatcagaatcttctatgtttcctccagctttacaacattcttgtcatacatatgcgctctaacccagaagtgcctaacaagtgtcttgtatgttggacc 208  Q
    ||||||||||||||| |||||| || | | || || ||||||||||||| | ||| |||||||||||||||||||| |||||||||||||||||||||||    
T  8795 caatcagaatcttctctgtttcttctaaccttgcatcattcttgtcataaacatgtgctctaacccagaagtgcctcacaagtgtcttgtatgttggacc 8696  T
Q  209 attcaacatcttgaagtattccatgagaccttgtgcttcgtagtaccctctga 261  Q
    |||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  8695 attcaacatcttgaagtattccatgagaccttatgcttcgtagtatcctctga 8643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 2107 - 2192
Alignment:
Q  165 gctctaacccagaagtgcctaacaagtgtcttgtatgttggaccattcaacatcttgaagtattccatgagaccttgtgcttcgta 250  Q
    ||||| |||||||| ||||||| ||| |||||||||||| ||||||| ||||| ||||| || |||||||||||||| ||||||||    
T  2107 gctcttacccagaactgcctaataagagtcttgtatgttagaccatttaacatattgaactaatccatgagaccttgagcttcgta 2192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0863 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0863
Description:

Target: scaffold0863; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 9 - 253
Target Start/End: Complemental strand, 4520 - 4276
Alignment:
Q  9 gagaagaaaacaggaatgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtaggat 108  Q
    |||| |||||||||||||||  |||||| | |||||||||||||||||||||||||||||||||| |||||||||||| | ||||| |||| ||||||||    
T  4520 gagacgaaaacaggaatgccagtgatgcttaacctgatttcagtgcatttaaatggttctaaaccaatttcttctctttattttccttccaaagtaggat 4421  T
Q  109 caatcagaatcttctatgtttcctccagctttacaacattcttgtcatacatatgcgctctaacccagaagtgcctaacaagtgtcttgtatgttggacc 208  Q
    ||||||||||||||| |||||||||||||||  || |||| |||||||||| |||| |||| ||| |||||| ||| ||||| || |  |||||||||||    
T  4420 caatcagaatcttctctgtttcctccagcttagcagcatttttgtcatacacatgcactcttacctagaagttcctgacaagagtttgatatgttggacc 4321  T
Q  209 attcaacatcttgaagtattccatgagaccttgtgcttcgtagta 253  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||    
T  4320 attcaacatcttgaagtactccattagaccttgtgcttcgtagta 4276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 9 - 261
Target Start/End: Complemental strand, 4136 - 3884
Alignment:
Q  9 gagaagaaaacaggaatgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtaggat 108  Q
    |||| ||||||||| ||| ||||||||| ||| |||| ||  ||||||  ||||||||||||||||||||||||||  || ||||| ||||| |||||||    
T  4136 gagatgaaaacagggatgtccatgatgcttgatctgacttttgtgcatacaaatggttctaaacccatttcttctcgagattttccttccatggtaggat 4037  T
Q  109 caatcagaatcttctatgtttcctccagctttacaacattcttgtcatacatatgcgctctaacccagaagtgcctaacaagtgtcttgtatgttggacc 208  Q
    |||||||||||||||  ||||| || | |||| || ||||||||||||||| |||||||||||| || ||||| || |||   || ||||||||||||||    
T  4036 caatcagaatcttctcagtttcttctaactttgcagcattcttgtcatacacatgcgctctaacacataagtgtctgacataagttttgtatgttggacc 3937  T
Q  209 attcaacatcttgaagtattccatgagaccttgtgcttcgtagtaccctctga 261  Q
    |||||||||||||||||| |||||||||||||||||||||| ||| |||||||    
T  3936 attcaacatcttgaagtactccatgagaccttgtgcttcgtcgtaacctctga 3884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 6e-52; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 47 - 250
Target Start/End: Complemental strand, 13131418 - 13131215
Alignment:
Q  47 ttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtaggatcaatcagaatcttctatgtttcctccagctttacaaca 146  Q
    ||||||||||  ||| |||||||||||||||||||||||||| ||||| |||| |||||||||||||||||| |||| |||||||||||||||   |  |    
T  13131418 ttcagtgcatacaaaaggttctaaacccatttcttctcttgattttccttccaaagtaggatcaatcagaattttctctgtttcctccagcttagtagta 13131319  T
Q  147 ttcttgtcatacatatgcgctctaacccagaagtgcctaacaagtgtcttgtatgttggaccattcaacatcttgaagtattccatgagaccttgtgctt 246  Q
    || |||||||||| |||  |||| ||||||||||| || |||||||| |  |||||||| |||||||||||||||||||||||||| |||||||||||||    
T  13131318 tttttgtcatacacatgttctcttacccagaagtgtctcacaagtgtttgatatgttgggccattcaacatcttgaagtattccattagaccttgtgctt 13131219  T
Q  247 cgta 250  Q
    ||||    
T  13131218 cgta 13131215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 2712702 - 2712654
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  2712702 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 2712654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 8009158 - 8009110
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  8009158 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 8009110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 9089048 - 9089096
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  9089048 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 9089096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 11009000 - 11009048
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  11009000 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 11009048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 24737916 - 24737964
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  24737916 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 24737964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 26397185 - 26397137
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  26397185 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 26397137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 26692830 - 26692782
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  26692830 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 26692782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 40049193 - 40049145
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  40049193 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 40049145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 6589 - 6825
Alignment:
Q  16 aaacaggaatgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtaggatcaatcag 115  Q
    ||||||| ||||||||||||| |||||||||||| |||||  |||||| ||||||||||||||||||||  || ||||| |||||||||||||||||||     
T  6589 aaacagggatgcccatgatgcttgacctgatttctgtgcaagtaaatg-ttctaaacccatttcttctcgagattttccttccatagtaggatcaatcaa 6687  T
Q  116 aatcttctatgtttcctccagctttacaacattcttgtcatacatatgcgctctaacccagaagtgcctaacaagtgtcttgtatgttggaccattcaac 215  Q
    ||||||||   |||| || | ||||  |   ||||||||||||| ||||||||||||| | |||||||| ||||| || |||||||||||||||||||||    
T  6688 aatcttctccatttcttctaactttgtagttttcttgtcatacacatgcgctctaaccaataagtgcctgacaagagttttgtatgttggaccattcaac 6787  T
Q  216 atcttgaagtattccatgagaccttgtgcttcgtagta 253  Q
    ||||| ||||| | ||||||||| ||| ||||||||||    
T  6788 atcttaaagtactgcatgagaccgtgtacttcgtagta 6825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 20378775 - 20378538
Alignment:
Q  9 gagaagaaaacaggaatgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtaggat 108  Q
    |||| ||||| ||| ||||||||||||  ||||||||||||  ||||  ||||||||||||||||||||||||||| ||| ||||| ||||  |||||||    
T  20378775 gagatgaaaatagggatgcccatgatgtttgacctgatttctctgcaagtaaatggttctaaacccatttcttctcgtgattttccttccaaggtaggat 20378676  T
Q  109 caatcagaatcttctatgtttcctccagctttacaacattcttgtcatacatatgcgctctaacccagaagtgcctaacaagtgtcttgtatgttggacc 208  Q
    |||||| || ||| | | |||| |||| |||  || | ||||| ||||| | ||||||||||||| |||||||||| ||||| ||||||||||||| |||    
T  20378675 caatcaaaa-cttttctatttcttccaacttagcagccttcttatcataaacatgcgctctaaccaagaagtgcctgacaagagtcttgtatgttgcacc 20378577  T
Q  209 attcaacatcttgaagtattccatgagaccttgtgcttc 247  Q
    ||||||||| |||||||| |||||||||||||| |||||    
T  20378576 attcaacattttgaagtactccatgagaccttgagcttc 20378538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 9 - 261
Target Start/End: Original strand, 17263142 - 17263394
Alignment:
Q  9 gagaagaaaacaggaatgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtaggat 108  Q
    |||| ||||||||| | ||||||||||| |||||||||||| || ||| |||||||||| |||||||||||||||  ||| ||||| ||||  |||||||    
T  17263142 gagatgaaaacagggacgcccatgatgcttgacctgatttctgtccatgtaaatggttccaaacccatttcttcttgtgattttccttccagggtaggat 17263241  T
Q  109 caatcagaatcttctatgtttcctccagctttacaacattcttgtcatacatatgcgctctaacccagaagtgcctaacaagtgtcttgtatgttggacc 208  Q
    |||||| ||  |||| | |||| ||||||    || | ||| | || || | ||||||||| |||||||||||||| ||||| |||||||||||||| ||    
T  17263242 caatcaaaactttctctatttcttccagcagagcagccttcatatcgtaaacatgcgctctgacccagaagtgcctgacaagggtcttgtatgttgggcc 17263341  T
Q  209 attcaacatcttgaagtattccatgagaccttgtgcttcgtagtaccctctga 261  Q
    |||| |||| |||||||||||||| |||||||| ||||||||||  |||||||    
T  17263342 attctacattttgaagtattccataagaccttgagcttcgtagttgcctctga 17263394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 24648684 - 24648927
Alignment:
Q  7 ctgagaagaaaacaggaatgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtagg 106  Q
    |||||| |||||||||||| ||||| |||| |||||| || ||||||||| | || |||||||| ||| ||||||||||||| || || ||||  |||||    
T  24648684 ctgagatgaaaacaggaatccccattatgcttgaccttatctcagtgcatctgaacggttctaagcccgtttcttctcttgatttaccttccaatgtagg 24648783  T
Q  107 atcaatcagaatcttctatgtttcctccagctttacaacattcttgtcatacatatgcgctctaacccagaagtgcctaacaagtgtcttgtatgttgga 206  Q
    ||||||| ||||||||| |||||||||||||||  || |||  || |||| || |||  | || |||||||| ||||| ||||| |   |||||||||||    
T  24648784 atcaatctgaatcttctctgtttcctccagcttagcagcatgtttatcatccacatgtacccttacccagaattgccttacaagagatgtgtatgttgga 24648883  T
Q  207 ccattcaacatcttgaagtattccatgagaccttgtgcttcgta 250  Q
    |||||||||||||||||| | ||||| | ||||||| |||||||    
T  24648884 ccattcaacatcttgaagaaatccattaaaccttgtacttcgta 24648927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 134
Target Start/End: Complemental strand, 22526887 - 22526816
Alignment:
Q  63 ggttctaaacccatttcttctcttgactttccctccatagtaggatcaatcagaatcttctatgtttcctcc 134  Q
    |||||||| |||| ||| |||||||| || || ||||  ||||||||||||||||||||||  |||||||||    
T  22526887 ggttctaagcccaattcatctcttgatttaccttccaatgtaggatcaatcagaatcttctcagtttcctcc 22526816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 245642 - 245690
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  245642 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 245690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 808762 - 808810
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  808762 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 808810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 3355674 - 3355626
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  3355674 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 3355626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 9344933 - 9344981
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  9344933 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 9344981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 13695609 - 13695561
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  13695609 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 13695561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 29080225 - 29080273
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  29080225 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 29080273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 36296756 - 36296804
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  36296756 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 36296804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 44484947 - 44484995
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  44484947 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 44484995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0379 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold0379
Description:

Target: scaffold0379; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 7 - 253
Target Start/End: Original strand, 1353 - 1599
Alignment:
Q  7 ctgagaagaaaacaggaatgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtagg 106  Q
    |||||| |||||| ||||| ||||| |||| ||||| |||||||||||||  |||||||||||||||||||||||||||| | ||||| ||||  |||||    
T  1353 ctgagatgaaaaccggaatccccattatgcttgaccggatttcagtgcatacaaatggttctaaacccatttcttctcttaattttccttccaatgtagg 1452  T
Q  107 atcaatcagaatcttctatgtttcctccagctttacaacattcttgtcatacatatgcgctctaacccagaagtgcctaacaagtgtcttgtatgttgga 206  Q
    ||||||||||||||||| | ||||||| | |||  |  || | || ||||||| ||| ||||| ||||||||||| || ||| |||| |  |||||| ||    
T  1453 atcaatcagaatcttctctatttcctctaacttagcttcagttttatcatacacatgtgctctgacccagaagtgtctcacaggtgtttgatatgttcga 1552  T
Q  207 ccattcaacatcttgaagtattccatgagaccttgtgcttcgtagta 253  Q
    ||||||| ||| ||||| |||||||  ||||||||||||||||||||    
T  1553 ccattcagcattttgaaatattccaatagaccttgtgcttcgtagta 1599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 92996 - 92758
Alignment:
Q  14 gaaaacaggaatgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtaggatcaatc 113  Q
    ||||||||| ||||||||||| | |||||||||||| |||||| |||||||||  |||||| ||||||||||||| || || ||||||||||||||||||    
T  92996 gaaaacagggatgcccatgatacttgacctgatttctgtgcatgtaaatggtttcaaaccc-tttcttctcttgatttcccttccatagtaggatcaatc 92898  T
Q  114 agaatcttctatgtttcctccagctttacaacattcttgtcatacatatgcgctctaacccagaagtgcctaacaagtgtcttgtatgttggaccattca 213  Q
    || || |||| |||||| ||||  ||  || | ||| |||| || | ||| ||||| ||||| || ||| | |  || ||||||||||||||||||||||    
T  92897 aggattttctctgtttcttccaatttagcagccttcctgtcgtagacatgtgctcttacccataaatgcatgatgagagtcttgtatgttggaccattca 92798  T
Q  214 acatcttgaagtattccatgagaccttgtgcttcgtagta 253  Q
    |||| | |||||| ||||||||||||||||||||||||||    
T  92797 acatttcgaagtaatccatgagaccttgtgcttcgtagta 92758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 241
Target Start/End: Complemental strand, 23434362 - 23434130
Alignment:
Q  9 gagaagaaaacaggaatgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtaggat 108  Q
    |||| ||||| ||| ||||||||||||| ||||||||| || ||   | | || ||||| || ||||| ||| || |||| |||| ||  ||||||||||    
T  23434362 gagatgaaaatagggatgcccatgatgcttgacctgatctctgtaactgtgaagggttccaatcccatatctgctattgattttctctttatagtaggat 23434263  T
Q  109 caatcagaatcttctatgtttcctccagctttacaacattcttgtcatacatatgcgctctaacccagaagtgcctaacaagtgtcttgtatgttggacc 208  Q
    ||||||| || || | || ||| |||| |||  || | || |||||||| | ||| ||||||||||| || | ||||||||  |||||||| ||||||||    
T  23434262 caatcaggattttatctgcttcttccaccttagcagctttattgtcataaacatgtgctctaacccataaattcctaacaatagtcttgtaagttggacc 23434163  T
Q  209 attcaacatcttgaagtattccatgagaccttg 241  Q
    ||||| ||  |||||||||||||||||||||||    
T  23434162 attcagcaatttgaagtattccatgagaccttg 23434130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 241
Target Start/End: Complemental strand, 23445729 - 23445497
Alignment:
Q  9 gagaagaaaacaggaatgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtaggat 108  Q
    |||| ||||| ||| ||||||||||||| ||||||||| || ||   | | || ||||| || ||||| ||| || |||| |||| ||  ||||||||||    
T  23445729 gagatgaaaatagggatgcccatgatgcttgacctgatctctgtaactgtgaagggttccaatcccatatctgctattgattttctctttatagtaggat 23445630  T
Q  109 caatcagaatcttctatgtttcctccagctttacaacattcttgtcatacatatgcgctctaacccagaagtgcctaacaagtgtcttgtatgttggacc 208  Q
    ||||||| || || | || ||| |||| |||  || | || |||||||| | ||| ||||||||||| || | ||||||||  |||||||| ||||||||    
T  23445629 caatcaggattttatctgcttcttccaccttagcagctttattgtcataaacatgtgctctaacccataaattcctaacaatagtcttgtaagttggacc 23445530  T
Q  209 attcaacatcttgaagtattccatgagaccttg 241  Q
    ||||| ||  |||||||||||||||||||||||    
T  23445529 attcagcaatttgaagtattccatgagaccttg 23445497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 247
Target Start/End: Complemental strand, 21613578 - 21613496
Alignment:
Q  165 gctctaacccagaagtgcctaacaagtgtcttgtatgttggaccattcaacatcttgaagtattccatgagaccttgtgcttc 247  Q
    ||||||||| |||||||||| || ||||| |  |||||||| ||||||||||| |||||||| ||||| || |||||||||||    
T  21613578 gctctaaccaagaagtgccttaccagtgtttgatatgttggtccattcaacatattgaagtaatccattaggccttgtgcttc 21613496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 6982934 - 6982886
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  6982934 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 6982886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 9343082 - 9343034
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  9343082 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 9343034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 14037169 - 14037121
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  14037169 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 14037121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 14561787 - 14561835
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  14561787 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 14561835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 22683245 - 22683197
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  22683245 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 22683197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 23303406 - 23303358
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  23303406 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 23303358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 23369063 - 23369015
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  23369063 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 23369015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 23703907 - 23703859
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  23703907 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 23703859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 24574200 - 24574152
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  24574200 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 24574152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 24591795 - 24591843
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  24591795 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 24591843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 24815041 - 24814993
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  24815041 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 24814993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 24820609 - 24820657
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  24820609 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 24820657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 27467289 - 27467241
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  27467289 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 27467241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 30231160 - 30231208
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  30231160 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 30231208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 36586249 - 36586297
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  36586249 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 36586297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 39494619 - 39494667
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  39494619 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 39494667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 42049907 - 42049859
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  42049907 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 42049859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0396 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 9 - 180
Target Start/End: Complemental strand, 10614 - 10443
Alignment:
Q  9 gagaagaaaacaggaatgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtaggat 108  Q
    |||| |||||||||||| | |||||||| |||||||||||||||||||  ||||||||||||||| |||||||||||||| ||||| |||| ||||||||    
T  10614 gagatgaaaacaggaatcctcatgatgcttgacctgatttcagtgcatacaaatggttctaaacctatttcttctcttgattttccttccaaagtaggat 10515  T
Q  109 caatcagaatcttctatgtttcctccagctttacaacattcttgtcatacatatgcgctctaacccagaagt 180  Q
    |||| ||||| |||| | |||||||||||||   | |||| |||||||||| ||| ||||| ||||||||||    
T  10514 caattagaattttctctatttcctccagcttagtagcatttttgtcatacacatgtgctcttacccagaagt 10443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 41615 - 41854
Alignment:
Q  14 gaaaacaggaatgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtaggatcaatc 113  Q
    ||||||||| ||||||||||||| |||||| ||||  |||||||| |||||||| | ||||||||| ||  |||| ||||| |||| |||||||| ||||    
T  41615 gaaaacagggatgcccatgatgcttgacctaatttatgtgcatttgaatggttccagacccatttcatcaattgattttccttccagagtaggattaatc 41714  T
Q  114 agaatcttctatgtttcctccagctttacaacattcttgtcatacatatgcgctctaacccagaagtgcctaacaagtgtcttgtatgttggaccattca 213  Q
    |  |  || | |||||| |||| |||   | | ||  |||| || |  || ||||||| ||||||||| |||||||||| ||||||||||||||||||||    
T  41715 aacactttttttgtttcttccaacttagtagcctttctgtcgtagacctgtgctctaatccagaagtgtctaacaagtgccttgtatgttggaccattca 41814  T
Q  214 acatcttgaagtattccatgagaccttgtgcttcgtagta 253  Q
    |||| |||||||| |||||||||||||||||||| |||||    
T  41815 acatattgaagtaatccatgagaccttgtgcttcatagta 41854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0810 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0810
Description:

Target: scaffold0810; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 961 - 718
Alignment:
Q  7 ctgagaagaaaacaggaatgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtagg 106  Q
    |||||| |||||  ||||| ||||| |||| |||||| || ||||||||    || |||||||| ||||||||||||||||| || || ||||  |||||    
T  961 ctgagatgaaaatcggaatccccattatgcttgaccttatctcagtgcaaacgaacggttctaagcccatttcttctcttgatttaccttccaatgtagg 862  T
Q  107 atcaatcagaatcttctatgtttcctccagctttacaacattcttgtcatacatatgcgctctaacccagaagtgcctaacaagtgtcttgtatgttgga 206  Q
    || ||||| |||||| | ||||||||| |||||  || |||  || ||| ||| ||| || || |||||||| ||||| ||||| |   |||||||||||    
T  861 attaatcataatcttttctgtttcctcaagcttagcagcatgtttatcaaacacatgtgcccttacccagaaatgccttacaagagatgtgtatgttgga 762  T
Q  207 ccattcaacatcttgaagtattccatgagaccttgtgcttcgta 250  Q
    | ||||| |||||||||||| ||||| | ||||||| |||||||    
T  761 ctattcagcatcttgaagtaatccattaaaccttgtacttcgta 718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 36137794 - 36138014
Alignment:
Q  21 ggaatgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtaggatcaatcagaatct 120  Q
    |||||||||||||||| |||||| || ||||||||   ||||||||||||||||||||||||    || |||||||||| ||||||||||||||| | ||    
T  36137794 ggaatgcccatgatgcttgaccttatctcagtgcaaacaaatggttctaaacccatttcttcatgagattttccctccaaagtaggatcaatcagtacct 36137893  T
Q  121 tctatgtttcctccagctttacaacattcttgtcatacatatgcgctctaacccagaagtgcctaacaagtgtcttgtatgttggaccattcaacatctt 220  Q
    | | || ||| |||| |||  || | |  ||||| || | |   |||||||||||||||||||| || || || |  |||||||| ||||||||||| ||    
T  36137894 tttctgcttcttccaccttagcaccttctttgtcgtagacacttgctctaacccagaagtgccttacgagcgtttgatatgttggtccattcaacatatt 36137993  T
Q  221 gaagtattccatgagaccttg 241  Q
    |||||| || ||||| |||||    
T  36137994 gaagtaatctatgaggccttg 36138014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 7511047 - 7511095
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  7511047 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 7511095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 22461095 - 22461035
Alignment:
Q  22 gaatgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttc 82  Q
    |||||||||||||||  ||||| || ||||||||   |||||||||||| |||||||||||    
T  22461095 gaatgcccatgatgctggaccttatctcagtgcagacaaatggttctaatcccatttcttc 22461035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 36243481 - 36243433
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  36243481 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 36243433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 38098860 - 38098908
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  38098860 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 38098908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 51652925 - 51652877
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  51652925 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 51652877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 167 - 253
Target Start/End: Complemental strand, 12954832 - 12954746
Alignment:
Q  167 tctaacccagaagtgcctaacaagtgtcttgtatgttggaccattcaacatcttgaagtattccatgagaccttgtgcttcgtagta 253  Q
    ||||||||| ||||||||||  || |||||||||||||||||||||| ||| ||||| || |||||||||||||| |||||||||||    
T  12954832 tctaacccataagtgcctaatgagagtcttgtatgttggaccattcagcattttgaaatactccatgagaccttgagcttcgtagta 12954746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 165 - 246
Target Start/End: Complemental strand, 17220245 - 17220164
Alignment:
Q  165 gctctaacccagaagtgcctaacaagtgtcttgtatgttggaccattcaacatcttgaagtattccatgagaccttgtgctt 246  Q
    ||||||||||| || |||||||||||  ||||||| ||| ||||||||||||| |||||||| ||||| |||||||| ||||    
T  17220245 gctctaacccaaaaatgcctaacaaggctcttgtaagttagaccattcaacatgttgaagtaatccataagaccttgagctt 17220164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 17251803 - 17251696
Alignment:
Q  8 tgagaagaaaacaggaatgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtagga 107  Q
    ||||| ||||||| | ||||||||||||| |||||||||||  |||||| | || ||||| ||||||||||||| |||||  || || |||| | |||||    
T  17251803 tgagatgaaaacatggatgcccatgatgcttgacctgatttatgtgcatgtgaagggttccaaacccatttcttatcttgttttaccatccagaatagga 17251704  T
Q  108 tcaatcag 115  Q
    ||||||||    
T  17251703 tcaatcag 17251696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 18138035 - 18137942
Alignment:
Q  21 ggaatgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtaggatcaatca 114  Q
    |||||||||||||| | ||| || || ||||||||   |||||||||||||||||||||||| |  || |||||||||| ||  ||||||||||    
T  18138035 ggaatgcccatgatacttgatcttatctcagtgcagacaaatggttctaaacccatttcttcacgagattttccctccaaagatggatcaatca 18137942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 251
Target Start/End: Complemental strand, 18137891 - 18137805
Alignment:
Q  165 gctctaacccagaagtgcctaacaagtgtcttgtatgttggaccattcaacatcttgaagtattccatgagaccttgtgcttcgtag 251  Q
    |||||||||||||||||||| || || || |  |||||||| ||||||||||| |||||||| || |  |  |||||||||||||||    
T  18137891 gctctaacccagaagtgccttaccagcgtttgatatgttggtccattcaacattttgaagtaatctaataagccttgtgcttcgtag 18137805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 4747551 - 4747599
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  4747551 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 4747599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 5544025 - 5543977
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  5544025 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 5543977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 5872705 - 5872657
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  5872705 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 5872657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 11279404 - 11279356
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  11279404 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 11279356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 12244562 - 12244514
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  12244562 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 12244514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 12293194 - 12293146
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  12293194 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 12293146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 13125522 - 13125570
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| || ||||||||||||||||    
T  13125522 acccatttcttctctggtttttccctccaaagaaggatcaatcagaatc 13125570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 14469452 - 14469500
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| || ||||||||||||||||    
T  14469452 acccatttcttctctggtttttccctccaaagaaggatcaatcagaatc 14469500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 16426163 - 16426115
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  16426163 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 16426115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 23761129 - 23761177
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  23761129 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 23761177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 24390523 - 24390475
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  24390523 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 24390475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 24663702 - 24663750
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  24663702 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 24663750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 28321242 - 28321194
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  28321242 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 28321194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 38198603 - 38198651
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  38198603 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 38198651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 39375917 - 39375965
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  39375917 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 39375965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 41687481 - 41687529
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  41687481 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 41687529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 18941612 - 18941852
Alignment:
Q  14 gaaaacaggaatgccc-atgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtaggatcaat 112  Q
    ||||||||| |||||| ||||||| ||||||||||||||||||| | |||||||  | |||||||||||| || || ||||| |  | || | ||||| |    
T  18941612 gaaaacagggatgccccatgatgcttgacctgatttcagtgcatctgaatggtttcagacccatttcttccctagattttccttgtagagcatgatcact 18941711  T
Q  113 cagaatcttctatgtttcctccagctttacaacattcttgtcatacatatgcgctctaacccagaagtgcct-aacaagtgtcttgtatgttggaccatt 211  Q
    ||  |||||||  ||||| ||||||||  |  ||||| ||||||| | ||||| ||| ||||| |||||| | | |||| |||||||||||||| ||||     
T  18941712 caatatcttctcagtttcttccagcttggctgcattcctgtcatagacatgcgttcttacccataagtgcttgatcaag-gtcttgtatgttggcccata 18941810  T
Q  212 caacatcttgaagtattccatgagaccttgtgcttcgtagta 253  Q
    |||||  |||||||| ||||  |||||| || ||||||||||    
T  18941811 caacaaattgaagtactccaaaagacctagtacttcgtagta 18941852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 9769785 - 9769737
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| || ||||||||||||||||    
T  9769785 acccatttcttctctggtttttccctccaaagaaggatcaatcagaatc 9769737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 9904595 - 9904547
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  9904595 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 9904547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 10270774 - 10270822
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  10270774 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 10270822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 11402198 - 11402150
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  11402198 acccatttcttctctagtttttccctccaaagtaggatcaaccagaatc 11402150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 27225218 - 27225266
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  27225218 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 27225266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 39177120 - 39177072
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  39177120 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 39177072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 43349191 - 43349239
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  43349191 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 43349239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 253
Target Start/End: Complemental strand, 23685 - 23626
Alignment:
Q  194 cttgtatgttggaccattcaacatcttgaagtattccatgagaccttgtgcttcgtagta 253  Q
    |||||| ||||||||||||||||| |||||||| |||||||||||||| ||||| |||||    
T  23685 cttgtaggttggaccattcaacatgttgaagtaatccatgagaccttgagcttcatagta 23626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 247
Target Start/End: Original strand, 10523 - 10746
Alignment:
Q  24 atgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtaggatcaatcagaatcttct 123  Q
    |||||||| |||| ||| || || ||||||||   ||||||||||| |||||||||||| |  || ||||||||||  ||||| | ||| || ||||| |    
T  10523 atgcccattatgcttgatcttatctcagtgcagacaaatggttctagacccatttcttcacgagattttccctccagcgtagggttaatgagtatctttt 10622  T
Q  124 atgtttcctccagctttacaacattctt-gtcatacatatgcgctctaacccagaagtgcctaacaagtgtcttgtatgttggaccattcaacatcttga 222  Q
     |||||| || ||||| |||  |||||| ||  || | |  ||||||||||||||||||||| || ||||| |  |||||||| | ||||||||| ||||    
T  10623 ctgtttcttcaagcttaacag-attctttgttgtagacactcgctctaacccagaagtgccttaccagtgtttgatatgttggtcgattcaacatattga 10721  T
Q  223 agtattccatgagaccttgtgcttc 247  Q
    | || ||||| || |||||||||||    
T  10722 aataatccattaggccttgtgcttc 10746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0324 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0324
Description:

Target: scaffold0324; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 253
Target Start/End: Original strand, 11518 - 11576
Alignment:
Q  195 ttgtatgttggaccattcaacatcttgaagtattccatgagaccttgtgcttcgtagta 253  Q
    ||||| ||||||||||||| |||||||||||| ||||||||  |||| ||||| |||||    
T  11518 ttgtaggttggaccattcagcatcttgaagtaatccatgaggtcttgagcttcatagta 11576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 34948 - 34996
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  34948 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 34996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 43999 - 43951
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  43999 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 43951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 3665214 - 3665262
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  3665214 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 3665262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 12723852 - 12723804
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  12723852 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 12723804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 16952793 - 16952841
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  16952793 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 16952841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 25791502 - 25791550
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  25791502 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 25791550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 26029207 - 26029255
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  26029207 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 26029255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 26868590 - 26868638
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  26868590 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 26868638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 27376580 - 27376628
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  27376580 acccatttcttctctggtttttccctccagagtaggatcaaccagaatc 27376628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 27466937 - 27466985
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  27466937 acccatttcttctctggtttttccctccagagtaggatcaaccagaatc 27466985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 454411 - 454459
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    |||||||||||||||||  ||||| |||| ||||||||||| |||||||    
T  454411 acccatttcttctcttgtttttccttccaaagtaggatcaaccagaatc 454459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 10747606 - 10747558
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  10747606 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 10747558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 10961375 - 10961327
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  10961375 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 10961327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 27660459 - 27660507
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  27660459 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 27660507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 36022137 - 36022185
Alignment:
Q  71 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 119  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  36022137 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 36022185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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