View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_246 (Length: 258)
Name: NF9839A_low_246
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_246 |
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| [»] chr8 (2 HSPs) |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 24 - 258
Target Start/End: Original strand, 41311027 - 41311261
Alignment:
| Q |
24 |
attgtgtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtag |
123 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311027 |
attgcgtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtag |
41311126 |
T |
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| Q |
124 |
agtaatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcata |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311127 |
agtaatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcata |
41311226 |
T |
|
| Q |
224 |
aatcagccactgaatagaaccattcaagaacgacc |
258 |
Q |
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|| |||||| ||||||||||||||||||||||||| |
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| T |
41311227 |
aaccagccaatgaatagaaccattcaagaacgacc |
41311261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 29 - 258
Target Start/End: Original strand, 43164710 - 43164939
Alignment:
| Q |
29 |
gtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtagagtaa |
128 |
Q |
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|||||||||||| ||||||||||||||||||| |||||||||||||||||| || ||||||| || || ||||| ||||||||||| | | ||| || |
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| T |
43164710 |
gtattcttgcattacccatatcttaagtgtagacatctccatattccatacgctgataagtccgcgaagtaccaacaaatcataaaggttgggagaaaaa |
43164809 |
T |
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| Q |
129 |
tcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatca |
228 |
Q |
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|||||||||||| ||||||| |||||| ||||||||| |||| |||||||||||||| |||||||||||||||| |||||||||| || || ||||| || |
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| T |
43164810 |
tcactataaaaatcatctggaagagcaatctctgacattgtcttttcctttaaatcataggcaataataacatctatttcagtctcataattataaacca |
43164909 |
T |
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| Q |
229 |
gccactgaatagaaccattcaagaacgacc |
258 |
Q |
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|||| ||||||||||||||||||||||||| |
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| T |
43164910 |
gccaatgaatagaaccattcaagaacgacc |
43164939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 29 - 258
Target Start/End: Complemental strand, 30165883 - 30165666
Alignment:
| Q |
29 |
gtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtagagtaa |
128 |
Q |
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|||||||||||||||||||||||||| ||||| | |||||| |||||||||||| ||||||| |||||||| |||||||||||||| |
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| T |
30165883 |
gtattcttgcatcacccatatcttaactgtagacctctccacattccatacactgataagtccatgaaataccaacaaatcataaattc----------- |
30165795 |
T |
|
| Q |
129 |
tcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatca |
228 |
Q |
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||| | || || ||| ||| ||||| |||||| || |||| ||||||||||||||||||||||||||||||||||||||||| || || ||||| || |
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| T |
30165794 |
-cacgagaacaatcatttggaagagctatctctgccattgtcgcttcctttaaatcaaaggcaataataacatccatttcagtctgataattataaacca |
30165696 |
T |
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| Q |
229 |
gccactgaatagaaccattcaagaacgacc |
258 |
Q |
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|||| |||||||||||||| |||||||||| |
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| T |
30165695 |
gccaatgaatagaaccattgaagaacgacc |
30165666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 127 - 242
Target Start/End: Original strand, 28180965 - 28181080
Alignment:
| Q |
127 |
aatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaat |
226 |
Q |
| |
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|||| ||||||||| ||||||| ||||| | ||||||| |||||||||||||||||||||||||||||||||| | |||| |||| || || ||||| |
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| T |
28180965 |
aatccctataaaaatcatctggaagagctatatctgacattgtcatttcctttaaatcaaaggcaataataacaccaattttggtctcataattataaac |
28181064 |
T |
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| Q |
227 |
cagccactgaatagaa |
242 |
Q |
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|||||| ||||||||| |
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| T |
28181065 |
cagccaatgaatagaa |
28181080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 254
Target Start/End: Original strand, 30124981 - 30125211
Alignment:
| Q |
24 |
attgtgtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtag |
123 |
Q |
| |
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|||| |||||| |||||||||| |||||||| || | |||||| | | |||||| ||| ||||||| |||||||| | |||||||||| | || || |
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| T |
30124981 |
attgcgtattcatgcatcacccgtatcttaactgcatccatctcaagaatccataaactgataagtccaccaaatactaacaaatcataatctacaggag |
30125080 |
T |
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| Q |
124 |
agtaatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcata |
223 |
Q |
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||||||| |||||||| ||| ||| ||||| | ||||||| |||| |||||||||||||||||||| |||||||||| | | |||| || || || |
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| T |
30125081 |
agtaatcggtataaaaatcatttggaagagctatttctgacattgtcgcttcctttaaatcaaaggcaacaataacatccttgttggtctcatgattatg |
30125180 |
T |
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| Q |
224 |
aatcagccactgaatagaaccattcaagaac |
254 |
Q |
| |
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|| |||||| ||||||| |||||||||||| |
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| T |
30125181 |
aaccagccaatgaatagtcccattcaagaac |
30125211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 254
Target Start/End: Original strand, 30131068 - 30131165
Alignment:
| Q |
157 |
tctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatcagccactgaatagaaccattcaagaac |
254 |
Q |
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||||||||| ||||||||||||||||| |||||| |||||||||||| || |||| || || ||||| |||||| ||||||| |||||||||||| |
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| T |
30131068 |
tctctgacattgtcatttcctttaaattaaaggctataataacatcccttcttgtctcataattataaaccagccaatgaatagccccattcaagaac |
30131165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 254
Target Start/End: Original strand, 30120068 - 30120165
Alignment:
| Q |
157 |
tctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatcagccactgaatagaaccattcaagaac |
254 |
Q |
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||||||| | |||| |||||||||||||||||||||||||||||| ||| | |||| || || || || || ||| ||||||| |||||||||||| |
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| T |
30120068 |
tctctgatattgtcgtttcctttaaatcaaaggcaataataacattcatgttggtctcatgattatgaaccacccaatgaatagccccattcaagaac |
30120165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 30130934 - 30130967
Alignment:
| Q |
26 |
tgtgtattcttgcatcacccatatcttaagtgta |
59 |
Q |
| |
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||||||||||||||||||||||||||||| |||| |
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| T |
30130934 |
tgtgtattcttgcatcacccatatcttaactgta |
30130967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 21426703 - 21426642
Alignment:
| Q |
142 |
catctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatcc |
203 |
Q |
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||||||| ||||| ||||||||| ||| ||||||||||||||| |||||||||||||||| |
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| T |
21426703 |
catctggaagagctatctctgacattgttgtttcctttaaatcaagggcaataataacatcc |
21426642 |
T |
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