View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_25 (Length: 440)
Name: NF9839A_low_25
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_25 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 15 - 432
Target Start/End: Original strand, 30126 - 30543
Alignment:
| Q |
15 |
atggacatcaacctcaacgatgaagatccatccaacgctgaaatcctcaacgaactcggcgaagatatgttcaaatacttttgcaaaaaagcttccgtca |
114 |
Q |
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| T |
30126 |
atggacatcgacctcaacgatgaagatccatccaacgctgaaatcctcaacgaactcggcgaagatatgttcaaatacttttgcaaaagagcttccgtca |
30225 |
T |
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| Q |
115 |
tgttcttcgatcaatacggtttaatcagtcaccaaatcaactcctataatcaattcatcacttctggtcttcaatccgcttttgattccttcggtgatct |
214 |
Q |
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| T |
30226 |
tgttcttcgatcaatacggtttaatcagtcaccaaatcaactcctataatcaattcatcacttctggtcttcaatccgcttttgattccttcggtgatct |
30325 |
T |
|
| Q |
215 |
cactgttacgccgggttttgatccttctaagaaagctgttgatgaacattaccaatatgccacggttaagtttgggaatgtaacgcttgaacgacctaag |
314 |
Q |
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| T |
30326 |
cactgttacgccgggttttgatccttctaagaaagctgttgatgaacattaccaatatgccacggttaagtttgggaatgttacgcttgaacgacctaag |
30425 |
T |
|
| Q |
315 |
ttttggtgtggtgaagggaatgctcaagagatgaagatgcttccgagacatgctaggttacagaggatgacttatgcttccaaagttaaagttgatgttc |
414 |
Q |
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| T |
30426 |
ttttggtgtggtgaagggaatgctcaagagatgaagatgcttccgagacatgctaggttacagaggatgacttatgcttccaaagttaaagttgatgttc |
30525 |
T |
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| Q |
415 |
aacttcaggttactcatt |
432 |
Q |
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| T |
30526 |
aacttcaggttactcatt |
30543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 31 - 415
Target Start/End: Complemental strand, 48883546 - 48883162
Alignment:
| Q |
31 |
acgatgaagatccatccaacgctgaaatcctcaacgaactcggcgaagatatgttcaaatacttttgcaaaaaagcttccgtcatgttcttcgatcaata |
130 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||| ||||||||||| ||||| |
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| T |
48883546 |
acgatgaagatcaatccaacgccgaaatcctcaacgaactcggcgacgatatggtcaaatacttttgcaagaaagcttccgttatgttcttcgaccaata |
48883447 |
T |
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| Q |
131 |
cggtttaatcagtcaccaaatcaactcctataatcaattcatcacttctggtcttcaatccgcttttgattccttcggtgatctcactgttacgccgggt |
230 |
Q |
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| T |
48883446 |
cggtttaatcagtcaccaaatcaactcgtacaatcaattcatcaattcgggtcttcaaagcgctttcgattccttcggtgatctcactgttacgcctggt |
48883347 |
T |
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| Q |
231 |
tttgatccttctaagaaagctgttgatgaacattaccaatatgccacggttaagtttgggaatgtaacgcttgaacgacctaagttttggtgtggtgaag |
330 |
Q |
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| T |
48883346 |
tttgatccttctaagaaaggtgctgatgaacattaccgttatgctacggttaagtttgggaaggttacgcttgagcgacctaagttttggtgtggtgaag |
48883247 |
T |
|
| Q |
331 |
ggaatgctcaagagatgaagatgcttccgagacatgctaggttacagaggatgacttatgcttccaaagttaaagttgatgttca |
415 |
Q |
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| T |
48883246 |
ggaatgctcaagagttgaagatgcttcccagacatgccaggttgcagaggatgacttatgcttctaagatgaaagttgatgttca |
48883162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 42 - 249
Target Start/End: Complemental strand, 53014798 - 53014590
Alignment:
| Q |
42 |
ccatccaacgctgaaatcctcaacgaactcggcgaagatatgttcaaatacttttgcaaaaaagcttccgtcatgttcttcgatcaatacggtttaatca |
141 |
Q |
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| T |
53014798 |
ccatcaaatgctgaaatcctcaacgaactaggtgaagacatggtcaaatatttctgcaaaaaagcttccatcgtgttcttcaacgagtacggtttaatca |
53014699 |
T |
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| Q |
142 |
gtcaccaaatcaactcctataatcaattcatcacttctggtcttcaatccgcttttgattccttcggtgatctcactgttacgcc-gggttttgatcctt |
240 |
Q |
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| T |
53014698 |
gtcaccaaatcaattcctataattaattcatcacttctggtcttcaaaatgctttcaattcctttggagagcttacagttacgcctggtttttgaccctt |
53014599 |
T |
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| Q |
241 |
ctaagaaag |
249 |
Q |
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| T |
53014598 |
ctacgaaag |
53014590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 53014544 - 53014493
Alignment:
| Q |
375 |
cagaggatgacttatgcttccaaagttaaagttgatgttcaacttcaggtta |
426 |
Q |
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| T |
53014544 |
cagaggatgacctatgcttccaaaatcaaaattgatgttcaagttcaggtta |
53014493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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