View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9839A_low_251 (Length: 256)

Name: NF9839A_low_251
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9839A_low_251
NF9839A_low_251
[»] chr7 (9 HSPs)
chr7 (23-235)||(23983290-23983502)
chr7 (19-109)||(36449287-36449376)
chr7 (54-157)||(9107308-9107410)
chr7 (19-81)||(22567909-22567970)
chr7 (19-127)||(9427899-9428007)
chr7 (19-67)||(28534308-28534355)
chr7 (195-238)||(36449164-36449207)
chr7 (141-227)||(8745244-8745330)
chr7 (22-230)||(3478440-3478647)
[»] chr2 (17 HSPs)
chr2 (28-253)||(10173368-10173593)
chr2 (19-235)||(16952162-16952380)
chr2 (19-235)||(17022827-17023045)
chr2 (19-235)||(17060133-17060351)
chr2 (45-166)||(20572226-20572346)
chr2 (141-227)||(34230292-34230378)
chr2 (19-98)||(27879932-27880011)
chr2 (22-102)||(12343037-12343116)
chr2 (23-72)||(4974992-4975042)
chr2 (23-72)||(4992900-4992950)
chr2 (19-81)||(13699083-13699144)
chr2 (19-80)||(22884931-22884991)
chr2 (23-126)||(27740153-27740255)
chr2 (141-227)||(7696053-7696139)
chr2 (155-225)||(41086715-41086785)
chr2 (19-68)||(25504706-25504754)
chr2 (22-97)||(41086572-41086648)
[»] chr1 (14 HSPs)
chr1 (19-235)||(16577344-16577561)
chr1 (21-224)||(41126271-41126462)
chr1 (19-98)||(38548856-38548934)
chr1 (22-108)||(16148987-16149073)
chr1 (19-98)||(38544535-38544613)
chr1 (141-227)||(16147649-16147735)
chr1 (19-102)||(32882584-32882668)
chr1 (141-227)||(6583120-6583206)
chr1 (19-81)||(17033810-17033871)
chr1 (141-227)||(31290923-31291009)
chr1 (30-109)||(10785252-10785330)
chr1 (74-102)||(24659146-24659174)
chr1 (19-101)||(31290799-31290880)
chr1 (50-126)||(49820311-49820387)
[»] chr5 (9 HSPs)
chr5 (19-244)||(17853851-17854073)
chr5 (22-174)||(26045746-26045901)
chr5 (25-109)||(33258665-33258750)
chr5 (21-81)||(39183985-39184044)
chr5 (19-68)||(8731153-8731201)
chr5 (22-109)||(14302226-14302314)
chr5 (50-98)||(24072094-24072142)
chr5 (196-244)||(24072226-24072274)
chr5 (53-101)||(39024259-39024306)
[»] chr6 (5 HSPs)
chr6 (23-235)||(32935126-32935337)
chr6 (144-227)||(20701710-20701793)
chr6 (22-102)||(20701583-20701664)
chr6 (53-161)||(21266263-21266369)
chr6 (50-126)||(33968443-33968518)
[»] chr4 (10 HSPs)
chr4 (53-157)||(12296322-12296426)
chr4 (27-230)||(19673188-19673392)
chr4 (27-230)||(19815009-19815213)
chr4 (22-109)||(22810943-22811029)
chr4 (22-109)||(48098546-48098632)
chr4 (22-109)||(49747739-49747826)
chr4 (19-94)||(20632265-20632339)
chr4 (22-102)||(38637016-38637095)
chr4 (141-227)||(49528163-49528249)
chr4 (53-98)||(46487477-46487522)
[»] scaffold1613 (1 HSPs)
scaffold1613 (19-98)||(814-892)
[»] chr3 (12 HSPs)
chr3 (84-227)||(39021122-39021267)
chr3 (50-253)||(823246-823450)
chr3 (50-109)||(14879648-14879708)
chr3 (19-66)||(32010016-32010063)
chr3 (141-227)||(25647777-25647863)
chr3 (19-100)||(37123601-37123683)
chr3 (22-102)||(14194152-14194229)
chr3 (77-122)||(23328188-23328233)
chr3 (19-98)||(25594328-25594406)
chr3 (19-126)||(27399140-27399246)
chr3 (25-100)||(28937498-28937574)
chr3 (22-101)||(33143733-33143813)
[»] chr8 (6 HSPs)
chr8 (19-143)||(17720503-17720626)
chr8 (22-102)||(10248349-10248430)
chr8 (141-227)||(17656906-17656992)
chr8 (22-109)||(12197857-12197945)
chr8 (22-109)||(12442285-12442373)
chr8 (12-152)||(15906839-15906978)
[»] scaffold0063 (1 HSPs)
scaffold0063 (19-227)||(58218-58430)
[»] scaffold0050 (1 HSPs)
scaffold0050 (22-109)||(36920-37005)


Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 23 - 235
Target Start/End: Complemental strand, 23983502 - 23983290
Alignment:
Q  23 caccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaat 122  Q
    |||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||    
T  23983502 caccacctaaaacagactcattcacgaaaacaaccactgaaaaacgatatacataactacccatcatcactactcaccccaaaagaagaccgctctaaat 23983403  T
Q  123 gaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccga 222  Q
    |||||||||| ||||||||| ||||| ||||||| ||||||||| ||||||||||||| |||||||  || |||||||||||||||||||||||||||||    
T  23983402 gaaattctcggtcctcatcatcaaagctgaaccagatccgaaaagctcatattcgaaagatcattcaactgtcaccacctctcaacctccgatacaccga 23983303  T
Q  223 aagaacacaaaaa 235  Q
    |||||||||||||    
T  23983302 aagaacacaaaaa 23983290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 36449376 - 36449287
Alignment:
Q  19 acatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaa 109  Q
    |||||||||||||||| |||||  |||||| |||| ||| |||||||||||||| ||||||||| ||||||||||||||||| | ||||||    
T  36449376 acatcaccacctaaaatagactacttcacg-aaacaaccgctgaaaaacgatatccataaccactcatcgtcactactcaccacaaaagaa 36449287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 9107410 - 9107308
Alignment:
Q  54 gaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaa 153  Q
    ||||| || |||||||||| ||||||||||||||| ||||||||| ||| ||| ||  || ||||||||||||  | | ||||||||||||||||||||     
T  9107410 gaccattggaaaacgatatccataaccacccatcgccactactcatcccaaaataactcccctctaaatgaaacac-ccatcctcatcaccaaagttgag 9107312  T
Q  154 ccac 157  Q
    ||||    
T  9107311 ccac 9107308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 22567909 - 22567970
Alignment:
Q  19 acatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataacca 81  Q
    ||||||||||||||||||||||  |||||| |||| |||||||||||||| ||| ||||||||    
T  22567909 acatcaccacctaaaacagactctttcacg-aaacaaccactgaaaaacggtatccataacca 22567970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 9427899 - 9428007
Alignment:
Q  19 acatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctct 118  Q
    ||||||| |||||||||| | |  |||||| | || |||||| ||||| ||||| ||||||||||| ||||||||||||| ||| ||| |  | | ||||    
T  9427899 acatcactacctaaaacaaattctttcacgaagacaaccactaaaaaatgatatccataaccacccgtcgtcactactcatccctaaatagcatccctct 9427998  T
Q  119 aaatgaaat 127  Q
    |||||||||    
T  9427999 aaatgaaat 9428007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 28534308 - 28534355
Alignment:
Q  19 acatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaac 67  Q
    ||||||||||||||||||||||  |||||| ||||||||||||||||||    
T  28534308 acatcaccacctaaaacagactctttcacg-aaacgaccactgaaaaac 28534355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 36449207 - 36449164
Alignment:
Q  195 caccacctctcaacctccgatacaccgaaagaacacaaaaataa 238  Q
    ||||||||||||||||||||| ||||||||||| || |||||||    
T  36449207 caccacctctcaacctccgatccaccgaaagaaaaccaaaataa 36449164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 227
Target Start/End: Complemental strand, 8745330 - 8745244
Alignment:
Q  141 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 227  Q
    |||||||| ||| ||||||||||||| ||| |||  |||| ||||| | |||  ||| ||||||| ||||||||| |||||||||||    
T  8745330 caccaaagctgagccacatccgaaaagctcctatctgaaagatcatgcagcttccacaacctctcgacctccgatccaccgaaagaa 8745244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 230
Target Start/End: Complemental strand, 3478647 - 3478440
Alignment:
Q  22 tcaccacctaaaacagacttattcacgtaaacgaccactgaaaaa-cgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaa 120  Q
    |||||| || |||||||| | |||||| | ||||| |||| |||| |||||| ||| |||| || ||||||||||||||||| |||||| ||  ||| ||    
T  3478647 tcaccaactcaaacagacgtcttcacgaatacgac-actgtaaaagcgatatccatcaccaaccgtcgtcactactcacccc-aaagaacactcctcaaa 3478550  T
Q  121 atgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacacc 220  Q
    || ||| || |  |||||| |||||||| | | |||  || |||||  ||| || ||||| ||||||| |||  | ||||||||| | ||||||| ||||    
T  3478549 attaaactcccagtcctcaacaccaaagcttagccaactcagaaaagttcacatccgaaagatcattcagcttccgccacctctcgatctccgatccacc 3478450  T
Q  221 gaaagaacac 230  Q
    ||||||||||    
T  3478449 gaaagaacac 3478440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 28 - 253
Target Start/End: Original strand, 10173368 - 10173593
Alignment:
Q  28 cctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaa 126  Q
    |||||||||||| | |||| | ||||||| |||| ||||||||||||||  ||||| ||||||||||||||||||| |||||| ||  ||| |||| |||    
T  10173368 cctaaaacagacgtcttcatgaaaacgactactgtaaaaacgatatacaacaccactcatcgtcactactcacccc-aaagaatactcctcaaaattaaa 10173466  T
Q  127 ttctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaaga 226  Q
     ||||  |||||| |||||||| ||| ||||||||||||| ||||||||| ||| |||||||  ||  ||||||||||| ||||||||| ||||||||||    
T  10173467 ctctcagtcctcaacaccaaagctgagccacatccgaaaagctcatattcaaaagatcattcaacttccaccacctctcgacctccgattcaccgaaaga 10173566  T
Q  227 acacaaaaataaccccaacaccaaact 253  Q
    |||| || | || ||||| ||||||||    
T  10173567 acaccaacaaaagcccaaaaccaaact 10173593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 16952162 - 16952380
Alignment:
Q  19 acatcaccacctaaaacagacttattcacgtaaacgacc-actg-aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgct 116  Q
    |||||||||| ||||||||||   |||||| |||| | | |||| ||||| ||||| ||| ||||| ||||||||||||||||||| |||||| ||| ||    
T  16952162 acatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaagaacacccct 16952261  T
Q  117 ctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgata 216  Q
    |||||||||| || |  |||||| |||||||||||| ||||||||||||| ||| ||| ||||| ||| ||  |||  |||||||||||||||||||||     
T  16952262 ctaaatgaaactcccagtcctcaacaccaaagttgatccacatccgaaaagctcctatccgaaagatcgtttagcttccaccacctctcaacctccgatc 16952361  T
Q  217 caccgaaagaacacaaaaa 235  Q
    |||||||||||||| ||||    
T  16952362 caccgaaagaacaccaaaa 16952380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 17022827 - 17023045
Alignment:
Q  19 acatcaccacctaaaacagacttattcacgtaaacgacc-actg-aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgct 116  Q
    |||||||||| ||||||||||   |||||| |||| | | |||| ||||| ||||| ||| ||||| ||||||||||||||||||| |||||| ||| ||    
T  17022827 acatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaagaacacccct 17022926  T
Q  117 ctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgata 216  Q
    |||||||||| || |  |||||| |||||||||||| ||||||||||||| ||| ||| ||||| ||| ||  |||  |||||||||||||||||||||     
T  17022927 ctaaatgaaactcccagtcctcaacaccaaagttgatccacatccgaaaagctcctatccgaaagatcgtttagcttccaccacctctcaacctccgatc 17023026  T
Q  217 caccgaaagaacacaaaaa 235  Q
    |||||||||||||| ||||    
T  17023027 caccgaaagaacaccaaaa 17023045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 17060133 - 17060351
Alignment:
Q  19 acatcaccacctaaaacagacttattcacgtaaacgacc-actg-aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgct 116  Q
    |||||||||| ||||||||||   |||||| |||| | | |||| ||||| ||||| ||| ||||| ||||||||||||||||||| |||||| ||| ||    
T  17060133 acatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaagaacacccct 17060232  T
Q  117 ctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgata 216  Q
    |||||||||| || |  |||||| |||||||||||| ||||||||||||| ||| ||| ||||| ||| ||  |||  |||||||||||||||||||||     
T  17060233 ctaaatgaaactcccagtcctcaacaccaaagttgatccacatccgaaaagctcctatccgaaagatcgtttagcttccaccacctctcaacctccgatc 17060332  T
Q  217 caccgaaagaacacaaaaa 235  Q
    |||||||||||||| ||||    
T  17060333 caccgaaagaacaccaaaa 17060351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 166
Target Start/End: Complemental strand, 20572346 - 20572226
Alignment:
Q  45 cacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcacc 144  Q
    |||| ||||||||||||||||||||||| |||||||||| |||| ||||||||||| | |||||| ||| |||||||||||| ||||  ||||||||||     
T  20572346 cacgaaaacgaccactgaaaaacgatatccataaccacc-atcgccactactcacctcaaaagaacacccctctaaatgaaactctcattcctcatcact 20572248  T
Q  145 aaagttgaaccacatccgaaaa 166  Q
    |||| | ||||| |||||||||    
T  20572247 aaagctaaaccatatccgaaaa 20572226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 141 - 227
Target Start/End: Complemental strand, 34230378 - 34230292
Alignment:
Q  141 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 227  Q
    |||||||||||| ||||||| ||||| ||| |||| |||| ||||||| |||  ||||||||||||||||||||| |||||||||||    
T  34230378 caccaaagttgagccacatctgaaaagctcttatttgaaagatcattcagcttccaccacctctcaacctccgatccaccgaaagaa 34230292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 27879932 - 27880011
Alignment:
Q  19 acatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactca 98  Q
    ||||||||||||||||||||||  |||| | |||||||| ||||||||||| || ||||||||| ||||  |||||||||    
T  27879932 acatcaccacctaaaacagactccttcaggaaaacgacctctgaaaaacgaaatccataaccactcatcaccactactca 27880011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 12343116 - 12343037
Alignment:
Q  22 tcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacccc 102  Q
    |||||||||||||||||||  |||||| |||||||| ||| ||||||||||| |  |||||| |||||||||||||||||||    
T  12343116 tcaccacctaaaacagactccttcacgaaaacgacctctgtaaaaacgatatcc--aaccactcatcgtcactactcacccc 12343037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 4975042 - 4974992
Alignment:
Q  23 caccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatat 72  Q
    ||||||||||||||||||| |||||| |||||||||||| |||||||||||    
T  4975042 caccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatat 4974992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 4992950 - 4992900
Alignment:
Q  23 caccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatat 72  Q
    ||||||||||||||||||| |||||| |||||||||||| |||||||||||    
T  4992950 caccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatat 4992900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 13699083 - 13699144
Alignment:
Q  19 acatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataacca 81  Q
    |||||||||||||||||| |||  || ||| ||||||||||||||||||| ||||||||||||    
T  13699083 acatcaccacctaaaacacactcttttacg-aaacgaccactgaaaaacggtatacataacca 13699144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 22884931 - 22884991
Alignment:
Q  19 acatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataacc 80  Q
    ||||||||||||||||||||||  |||||| ||||||||||||| |||||| || |||||||    
T  22884931 acatcaccacctaaaacagactccttcacg-aaacgaccactgacaaacgaaatccataacc 22884991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 27740255 - 27740153
Alignment:
Q  23 caccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaat 122  Q
    |||||||||| ||| |||  |||||| |||| ||||||||| |||||||| ||||||||| | ||| ||||||||| |||  || || ||| ||||||||    
T  27740255 caccacctaatacaaactccttcacg-aaactaccactgaagaacgatattcataaccactcgtcgccactactcatcccagaataacacccctctaaat 27740157  T
Q  123 gaaa 126  Q
    ||||    
T  27740156 gaaa 27740153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 227
Target Start/End: Complemental strand, 7696139 - 7696053
Alignment:
Q  141 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 227  Q
    |||||||||||| ||||||||  ||| ||| ||| ||||| ||||||| |||  ||||||||| | |||| |||| |||||||||||    
T  7696139 caccaaagttgagccacatcctcaaatctcctatccgaaagatcattcagcttccaccacctcccgaccttcgatccaccgaaagaa 7696053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 41086715 - 41086785
Alignment:
Q  155 cacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaag 225  Q
    ||||||| |||| ||| ||| ||||| ||||||| |||  ||||||||||| ||||||||| |||||||||    
T  41086715 cacatccaaaaagctcttatccgaaagatcattcagcttccaccacctctcgacctccgatccaccgaaag 41086785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 25504706 - 25504754
Alignment:
Q  19 acatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacg 68  Q
    |||||||||||||||||||| |  |||||| |||||||||||||||||||    
T  25504706 acatcaccacctaaaacagagtctttcacg-aaacgaccactgaaaaacg 25504754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 41086572 - 41086648
Alignment:
Q  22 tcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactc 97  Q
    ||||||||||||||||||   || ||| || ||||||||  ||||||||||| ||  ||||||||||||||||||||    
T  41086572 tcaccacctaaaacagaccccttaacgaaagcgaccactctaaaaacgatatccaataccacccatcgtcactactc 41086648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 16577561 - 16577344
Alignment:
Q  19 acatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaac-gatatacataaccacccatcgtcactactcaccccgaaagaagaccgctc 117  Q
    |||||| |||||||||||||||  |||||| ||||||||||| |||||  ||||| ||||||||  ||||||| |||||||| || |||||| ||| |||    
T  16577561 acatcatcacctaaaacagactctttcacgaaaacgaccactcaaaaaatgatatccataaccattcatcgtccctactcactccaaaagaacacccctc 16577462  T
Q  118 taaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatac 217  Q
    |||| |||| | ||  ||  ||||||||||||||| ||||||||||||| ||| ||||| ||| ||||||| |||  |||||||||||||||||| ||      
T  16577461 taaaagaaactttcagtcaccatcaccaaagttgagccacatccgaaaagctcctattccaaagatcattcagcttccaccacctctcaacctccaatct 16577362  T
Q  218 accgaaagaacacaaaaa 235  Q
    ||||||||||| ||||||    
T  16577361 accgaaagaacgcaaaaa 16577344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 21 - 224
Target Start/End: Original strand, 41126271 - 41126462
Alignment:
Q  21 atcaccacctaaaacagacttattcacgtaaacga-ccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctcta 119  Q
    |||||||||||||||||||  ||||||| |||| | |||||| |||||||||| ||| ||||||||||||||||||||||||             |||||    
T  41126271 atcaccacctaaaacagacgcattcacgaaaacaaaccactgtaaaacgatatccatcaccacccatcgtcactactcaccc-------------ctcta 41126357  T
Q  120 aatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacac 219  Q
    ||||||| ||||  ||||||||||||||||||| ||||||| ||||| ||| ||| | ||| ||| ||| |||  || ||||||||||||||| || |||    
T  41126358 aatgaaactctcagtcctcatcaccaaagttgatccacatctgaaaagctcctatccaaaagatcgttcagcttccagcacctctcaacctccaatccac 41126457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 38548856 - 38548934
Alignment:
Q  19 acatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactca 98  Q
    ||||||||||||||||||||||  |||||| |||||| |||||||||||||||| |||||||||||||||||||||||||    
T  38548856 acatcaccacctaaaacagactctttcacg-aaacgatcactgaaaaacgatattcataaccacccatcgtcactactca 38548934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 16149073 - 16148987
Alignment:
Q  22 tcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaaga 108  Q
    ||||||||||||||||||   |||| ||||||||| ||||||||||||||| || || ||||||||||||||||||||||| |||||    
T  16149073 tcaccacctaaaacagacaccttcatgtaaacgactactgaaaaacgatatccaaaagcacccatcgtcactactcacccccaaaga 16148987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 38544535 - 38544613
Alignment:
Q  19 acatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactca 98  Q
    ||||||||||||||||||||||  |||||| ||  || ||||| |||||||||| ||||||||| |||||||||||||||    
T  38544535 acatcaccacctaaaacagactctttcacggaat-gatcactggaaaacgatatccataaccactcatcgtcactactca 38544613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 227
Target Start/End: Complemental strand, 16147735 - 16147649
Alignment:
Q  141 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 227  Q
    |||||||| ||| ||||||||||||| |||||||  |||| |||||||  || |||||||||||| |||||||||  ||||||||||    
T  16147735 caccaaagctgagccacatccgaaaagctcatatctgaaagatcattcaactttcaccacctctccacctccgatctaccgaaagaa 16147649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 32882668 - 32882584
Alignment:
Q  19 acatcaccacctaaaacagacttattcacgtaaacgaccactgaaaa-acgatatacataaccacccatcgtcactactcacccc 102  Q
    |||||||| |||||||| ||||  |||||| |||||| ||||| ||| ||||||| ||  |||||||||||||||||||||||||    
T  32882668 acatcaccgcctaaaactgactccttcacgaaaacgagcactgtaaacacgatatccaacaccacccatcgtcactactcacccc 32882584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 227
Target Start/End: Original strand, 6583120 - 6583206
Alignment:
Q  141 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 227  Q
    |||||||| ||| || |||||||||| ||| |||  |||| |||| || |||  ||||||||||| ||||||||| |||||||||||    
T  6583120 caccaaagctgagccgcatccgaaaagctcctatctgaaagatcaatcagcttccaccacctctcgacctccgattcaccgaaagaa 6583206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 17033871 - 17033810
Alignment:
Q  19 acatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataacca 81  Q
    |||| ||||||||||||| |||  |||||| ||||||||||| ||||||| ||||||||||||    
T  17033871 acattaccacctaaaacatactctttcacg-aaacgaccacttaaaaacggtatacataacca 17033810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 227
Target Start/End: Original strand, 31290923 - 31291009
Alignment:
Q  141 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 227  Q
    |||||||| ||| ||||||||||||| ||| ||| ||||| ||||  |  ||  ||||||||||| ||||||||| |||||||||||    
T  31290923 caccaaagctgagccacatccgaaaagctcctatccgaaagatcaagcaacttccaccacctctcgacctccgatccaccgaaagaa 31291009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 109
Target Start/End: Original strand, 10785252 - 10785330
Alignment:
Q  30 taaaacagacttattcacgtaaacgaccactgaaaaa-cgatatacataaccacccatcgtcactactcaccccgaaagaa 109  Q
    |||||||||||  |||||| |||||||  |||||||| |||||| ||  ||||||||||||||||||||| |||| |||||    
T  10785252 taaaacagactccttcacgaaaacgacatctgaaaaaacgatatcca--accacccatcgtcactactcatcccgcaagaa 10785330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 102
Target Start/End: Complemental strand, 24659174 - 24659146
Alignment:
Q  74 cataaccacccatcgtcactactcacccc 102  Q
    |||||||||||||||||||||||||||||    
T  24659174 cataaccacccatcgtcactactcacccc 24659146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 31290799 - 31290880
Alignment:
Q  19 acatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccc 101  Q
    ||||||||||||||| ||||||  ||| || |||||||||||| ||||| ||||  |  ||||| |||||||||||||||||||    
T  31290799 acatcaccacctaaatcagactccttcgcgaaaacgaccactgtaaaaatgatagcc--aaccatccatcgtcactactcaccc 31290880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 126
Target Start/End: Complemental strand, 49820387 - 49820311
Alignment:
Q  50 aaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaa 126  Q
    |||||| |||||||||||||||| ||||||||||| ||| ||| || || ||| ||| |  ||| ||||||||||||    
T  49820387 aaacgagcactgaaaaacgatatccataaccacccgtcgccaccacacatcccaaaatatcacccctctaaatgaaa 49820311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 17853851 - 17854073
Alignment:
Q  19 acatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctct 118  Q
    ||||||||  ||||||||||||  || ||| |||||| |||||||||||||||| ||||||||||||||  ||||||||||||| |||| ||||  ||||    
T  17853851 acatcaccttctaaaacagactcctttacg-aaacgatcactgaaaaacgatatccataaccacccatcaccactactcaccccaaaagtagacacctct 17853949  T
Q  119 aaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgataca 218  Q
    ||||||||  | | ||||||||||||| || ||| |||||||||||||  |||||||| ||| |||||||  ||  |||||||||||||| || | | ||    
T  17853950 aaatgaaacac-caatcctcatcaccatagctgagccacatccgaaaa-gtcatattctaaagatcattcaacttccaccacctctcaacttcaggtcca 17854047  T
Q  219 ccgaaagaacacaaaaataaccccaa 244  Q
    |||||||||||  ||||||| |||||    
T  17854048 ccgaaagaacattaaaataagcccaa 17854073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 174
Target Start/End: Original strand, 26045746 - 26045901
Alignment:
Q  22 tcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccccga--aagaagaccgctct 118  Q
    |||||||||||||||||||| |||| | ||| |||||| | |||||||| || ||  ||| ||||||||||||||||||||| |  || || ||| |||     
T  26045746 tcaccacctaaaacagacttcttcatgaaaatgaccacggtaaaaacgaaatccaacacctcccatcgtcactactcaccccaaagaaaaacacccctca 26045845  T
Q  119 aaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatat 174  Q
    |||| ||| |||| ||||| | ||||||||||||  ||| |||||||| |||||||    
T  26045846 aaattaaactctcaatcctaaacaccaaagttgagtcacctccgaaaagctcatat 26045901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 33258665 - 33258750
Alignment:
Q  25 ccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaa 109  Q
    ||||||||||||||  | |||||| || ||||||||| ||||||||||| ||  |||| |||||| ||||||||||||| ||||||    
T  33258665 ccacctaaaacagatctcttcacgaaagcgaccactgtaaaaacgatatccaataccatccatcgccactactcacccctaaagaa 33258750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 39183985 - 39184044
Alignment:
Q  21 atcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataacca 81  Q
    ||||||||||||||||||||   ||||| ||||||||||||||||||| ||| ||||||||    
T  39183985 atcaccacctaaaacagactctatcacg-aaacgaccactgaaaaacggtatccataacca 39184044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 8731201 - 8731153
Alignment:
Q  19 acatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacg 68  Q
    |||||||||||||||||||| |  |||||| |||||||||||||||||||    
T  8731201 acatcaccacctaaaacagagtctttcacg-aaacgaccactgaaaaacg 8731153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 109
Target Start/End: Original strand, 14302226 - 14302314
Alignment:
Q  22 tcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaa 109  Q
    ||||||||||||||||| |  ||| || ||||||||| || ||||||||||| ||  ||||||  ||||||||||||| ||| ||||||    
T  14302226 tcaccacctaaaacagattccttcgcgaaaacgaccaatgtaaaaacgatatccaacaccacctgtcgtcactactcatccccaaagaa 14302314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 24072094 - 24072142
Alignment:
Q  50 aaacgaccactgaaaaacgatatacataaccacccatcgtcactactca 98  Q
    ||||||||||| |||||||||||  || | |||||||||||||||||||    
T  24072094 aaacgaccactaaaaaacgatatctatgatcacccatcgtcactactca 24072142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 24072226 - 24072274
Alignment:
Q  196 accacctctcaacctccgatacaccgaaagaacacaaaaataaccccaa 244  Q
    ||||||| |||||||||| | |||||||||||||| |||| ||||||||    
T  24072226 accacctttcaacctccggtccaccgaaagaacaccaaaaaaaccccaa 24072274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 39024259 - 39024306
Alignment:
Q  53 cgaccactgaaaaacgatatacataaccacccatcgtcactactcaccc 101  Q
    |||||| ||||||||||||| ||||| ||| ||||||||||||||||||    
T  39024259 cgaccattgaaaaacgatatccataa-cactcatcgtcactactcaccc 39024306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 235
Target Start/End: Original strand, 32935126 - 32935337
Alignment:
Q  23 caccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaat 122  Q
    |||||||||||| |||||  || ||| ||||| || || |||||||||||||||||||||||||| |||||||| ||||| ||| || | | ||||||||    
T  32935126 caccacctaaaatagactccttaacgaaaacgccccctcaaaaacgatatacataaccacccatcatcactactgacccc-aaaaaacatccctctaaat 32935224  T
Q  123 gaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccga 222  Q
    |||| || |  | ||||||||||||| |||   ||||||||||| ||||| ||||||| ||||| | |||  ||||||||| ||||||  ||  ||||||    
T  32935225 gaaactcacagtgctcatcaccaaagctgagttacatccgaaaaactcatgttcgaaagatcatgcagcttccaccacctcccaacctttgaaccaccga 32935324  T
Q  223 aagaacacaaaaa 235  Q
    |||||||| ||||    
T  32935325 aagaacactaaaa 32935337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 227
Target Start/End: Original strand, 20701710 - 20701793
Alignment:
Q  144 caaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 227  Q
    ||||||||| |||||| |||||| ||| ||| ||||| ||||||| |||  ||| ||||||| ||||||||| |||||||||||    
T  20701710 caaagttgagccacattcgaaaagctcctatccgaaagatcattcagcttccactacctctcgacctccgatccaccgaaagaa 20701793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 20701583 - 20701664
Alignment:
Q  22 tcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacccc 102  Q
    |||||||||| |||||||  ||||||| || | ||||||| ||||||||||| ||  || ||||||||||||||||||||||    
T  20701583 tcaccacctataacagacccattcacgaaagcaaccactgtaaaaacgatatccaatactacccatcgtcactactcacccc 20701664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 161
Target Start/End: Complemental strand, 21266369 - 21266263
Alignment:
Q  53 cgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttga 152  Q
    ||||||||||||||||| || || ||| ||| |||||||||||||||||| || ||| |||| | |||| ||||  ||| ||||||| |||||||  |||    
T  21266369 cgaccactgaaaaacgacatccagaacaacc-atcgtcactactcaccccaaaggaacaccgttgtaaaagaaa-actcaatcctcaacaccaaaactga 21266272  T
Q  153 accacatcc 161  Q
     ||||||||    
T  21266271 gccacatcc 21266263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 126
Target Start/End: Original strand, 33968443 - 33968518
Alignment:
Q  50 aaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaa 126  Q
    ||||||||||||||||| | ||| ||||||||  |||| |||||||||| ||| ||| || ||| ||||||||||||    
T  33968443 aaacgaccactgaaaaatggtatccataacca-gcatcatcactactcatcccaaaataacacccctctaaatgaaa 33968518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 157
Target Start/End: Complemental strand, 12296426 - 12296322
Alignment:
Q  53 cgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttga 152  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||| ||| ||| || ||| ||||||||||||  |||  ||||||||||| |||||||    
T  12296426 cgaccactgaaaaacgatatccataaccacccatcgccactactcatcccaaaataacacccctctaaatgaaacactccgtcctcatcacctaagttga 12296327  T
Q  153 accac 157  Q
     ||||    
T  12296326 gccac 12296322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 230
Target Start/End: Complemental strand, 19673392 - 19673188
Alignment:
Q  27 acctaaaacagacttattcacgtaaacgaccactgaaaaa-cgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaa 125  Q
    |||| |||||||| | |||||| ||| |||||||| |||| | |||| ||  |||| || ||||||||||||||||| |||||| ||  ||| |||| ||    
T  19673392 acctcaaacagacgtcttcacgaaaatgaccactgtaaaagcaatatccaacaccatccgtcgtcactactcacccccaaagaacactcctcaaaattaa 19673293  T
Q  126 attctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaag 225  Q
    | ||||  |||||| |||||||||| | |||||||||||||  |||||| | ||||||||||  |||  ||||| || || |||  |||| |||||||||    
T  19673292 actctcagtcctcaacaccaaagtttagccacatccgaaaagttcatatccaaaatatcatttagcttccaccatctatcgaccgtcgatccaccgaaag 19673193  T
Q  226 aacac 230  Q
    |||||    
T  19673192 aacac 19673188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 230
Target Start/End: Original strand, 19815009 - 19815213
Alignment:
Q  27 acctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaa 125  Q
    |||| |||||||| | |||||| ||| |||||| | ||||| ||||| ||  |||| || | ||||||||||||||| |||||| ||  ||| | || ||    
T  19815009 acctcaaacagacgtcttcacgaaaatgaccacggtaaaaatgatatccaataccatccgttgtcactactcacccccaaagaacacttctcaagattaa 19815108  T
Q  126 attctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaag 225  Q
    | ||||  |||||| |||||||||| | ||||||| |||||  || ||| ||||| ||||||  |||  ||||| ||||| ||||||| | |||||||||    
T  19815109 actctcagtcctcaacaccaaagtttagccacatcggaaaagttcctatccgaaagatcatttagcttccaccatctctcgacctccggtccaccgaaag 19815208  T
Q  226 aacac 230  Q
    |||||    
T  19815209 aacac 19815213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 109
Target Start/End: Original strand, 22810943 - 22811029
Alignment:
Q  22 tcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaa 109  Q
    ||||| |||||||||||||  |||||| || ||||||||| ||||||||||| |   |||| |||||||||||||||||||| ||||||    
T  22810943 tcacctcctaaaacagactgcttcacgaaaccgaccactgtaaaaacgatatcct--accatccatcgtcactactcacccccaaagaa 22811029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 48098632 - 48098546
Alignment:
Q  22 tcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaa 109  Q
    |||||||||||||||  |||  ||||  |||||||||||| ||||||||||| ||| || |||| ||||||||||||||||| ||||||    
T  48098632 tcaccacctaaaacactctt--tcacaaaaacgaccactgtaaaaacgatatccatcacaacccgtcgtcactactcacccccaaagaa 48098546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 49747826 - 49747739
Alignment:
Q  22 tcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaa 109  Q
    |||||||||||||||||||  |||||| ||||||||| || |||||||| || ||  ||| ||||| ||||||||||||||| ||||||    
T  49747826 tcaccacctaaaacagactctttcacgaaaacgaccattgtaaaaacga-atccaacaccgcccattgtcactactcacccctaaagaa 49747739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 20632265 - 20632339
Alignment:
Q  19 acatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcacta 94  Q
    |||||||| |||||||||||||  |||||  |||| ||||||||| ||||||| |||||||||||| ||| |||||    
T  20632265 acatcaccccctaaaacagactctttcaca-aaacaaccactgaagaacgatacacataaccacccgtcgccacta 20632339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 38637016 - 38637095
Alignment:
Q  22 tcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacccc 102  Q
    ||||||||||||||| |||  |||||| |||| ||| ||| ||||| ||||| ||  |||||||||||||||||||||||||    
T  38637016 tcaccacctaaaacaaactccttcacgaaaacaaccgctgtaaaaatgatatcca--accacccatcgtcactactcacccc 38637095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 227
Target Start/End: Complemental strand, 49528249 - 49528163
Alignment:
Q  141 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 227  Q
    |||||||| ||||||||||||| ||| ||  ||| ||||| |||||||  ||  ||||||||| | ||||||||| |||||||||||    
T  49528249 caccaaagctgaaccacatccgcaaagcttctatccgaaagatcattcatcttccaccacctcccgacctccgatccaccgaaagaa 49528163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 46487522 - 46487477
Alignment:
Q  53 cgaccactgaaaaacgatatacataaccacccatcgtcactactca 98  Q
    |||||||||||||||||||| |||||||||  |||| |||||||||    
T  46487522 cgaccactgaaaaacgatattcataaccacatatcgccactactca 46487477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 814 - 892
Alignment:
Q  19 acatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactca 98  Q
    ||||||||||||||||||||||  |||||| ||  || ||||| |||||||||| ||||||||| |||||||||||||||    
T  814 acatcaccacctaaaacagactctttcacggaat-gatcactggaaaacgatatccataaccactcatcgtcactactca 892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 227
Target Start/End: Original strand, 39021122 - 39021267
Alignment:
Q  84 catcgtcactactcaccccgaaagaagaccgc-tctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcg-aaat 181  Q
    |||||||||||||||| || ||||||   ||| || |||||||| ||||  |||||| |||||||| | | ||||||||||||| ||||||| || |||     
T  39021122 catcgtcactactcacacccaaagaaacacgcgtcaaaatgaaactctcagtcctcaacaccaaagctaagccacatccgaaaaactcatatccgaaaag 39021221  T
Q  182 atcattccgctatcaccacctctcaacctccgatacaccgaaagaa 227  Q
    |||| || |||| ||||| ||||| ||||||||| |||| ||||||    
T  39021222 atcaatcagctaccaccatctctcgacctccgatccaccaaaagaa 39021267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 253
Target Start/End: Original strand, 823246 - 823450
Alignment:
Q  50 aaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaag-aagaccgctctaaatgaaattctcgatcctcatcaccaaag 148  Q
    |||| |||||||||||||||||| ||||||||||| ||| | ||||||||||  |||| || ||| |||||| | |||  |    |||| || |||| |     
T  823246 aaacaaccactgaaaaacgatatccataaccacccttcgcctctactcaccctaaaagaaacacctctctaattcaaacaccatgtccttattaccataa 823345  T
Q  149 ttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaacacaaaaataaccccaacacc 248  Q
    |||| ||||||| |||||  || ||||  ||| ||||||| |||  | ||||||||||||||| | |  ||||||||||||| ||||||| ||||| ||     
T  823346 ttgagccacatctgaaaatgtcctattgaaaagatcattcagcttccgccacctctcaacctctggtctaccgaaagaacaccaaaataagcccaaaaca 823445  T
Q  249 aaact 253  Q
    |||||    
T  823446 aaact 823450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 14879708 - 14879648
Alignment:
Q  50 aaacgaccactgaaaaa-cgatatacataaccacccatcgtcactactcaccccgaaagaa 109  Q
    ||||||||||||||||| |||||| ||  ||||| ||||||||||| ||||||||||||||    
T  14879708 aaacgaccactgaaaaaacgatatccaacaccacacatcgtcactattcaccccgaaagaa 14879648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 32010063 - 32010016
Alignment:
Q  19 acatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaa 66  Q
    ||||||||||||||||||||||  |||||| |||||||| ||||||||    
T  32010063 acatcaccacctaaaacagactccttcacgaaaacgacctctgaaaaa 32010016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 227
Target Start/End: Complemental strand, 25647863 - 25647777
Alignment:
Q  141 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 227  Q
    |||||||  ||| |||| |||||||| ||||||  ||||| |||||||  || |||||||||||| ||||||||| |||| ||||||    
T  25647863 caccaaaactgagccacgtccgaaaagctcataaccgaaagatcattcaactttcaccacctctcgacctccgatccaccaaaagaa 25647777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 37123683 - 37123601
Alignment:
Q  19 acatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacc 100  Q
    |||||||||  ||||| |||||| |||||| |||||||||||| ||||||||||| ||  ||||||  | |||||||||||||    
T  37123683 acatcaccatataaaatagacttcttcacgaaaacgaccactgtaaaaacgatatccaacaccacctgttgtcactactcacc 37123601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 14194229 - 14194152
Alignment:
Q  22 tcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcacccc 102  Q
    |||||||||||||||||||   ||||| || || |||||||| |||||||| ||  |||| ||||||||||||||||||||    
T  14194229 tcaccacctaaaacagactccatcacgaaatcg-ccactgaataacgatatcca--accatccatcgtcactactcacccc 14194152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 23328188 - 23328233
Alignment:
Q  77 aaccacccatcgtcactactcaccccgaaagaagaccgctctaaat 122  Q
    |||||||||||||||||||||||||| |||||| ||| ||| ||||    
T  23328188 aaccacccatcgtcactactcacccccaaagaacaccactcaaaat 23328233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 25594328 - 25594406
Alignment:
Q  19 acatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaa-cgatatacataaccacccatcgtcactactca 98  Q
    ||||||| |||||||||| |||  |||||  ||||||||||||||||| |||||| || |||||||||||| |||||||||    
T  25594328 acatcactacctaaaacatactccttcaca-aaacgaccactgaaaaaacgatatcca-aaccacccatcgccactactca 25594406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 27399246 - 27399140
Alignment:
Q  19 acatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataa-ccacccatcgtcactactcaccccgaaagaagaccgctc 117  Q
    |||||| |||||||||||| ||  |||||| || ||||||||||||| ||||||  |||| |||||||| | ||||||||| ||| |||||| |||  ||    
T  27399246 acatcatcacctaaaacaggctccttcacgcaa-cgaccactgaaaa-cgatatctataaaccacccattgccactactcagcccaaaagaacacccgtc 27399149  T
Q  118 taaatgaaa 126  Q
    |||||||||    
T  27399148 taaatgaaa 27399140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 28937498 - 28937574
Alignment:
Q  25 ccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacc 100  Q
    |||||||||||||||   |||||| ||  |||||||| ||||||||||| ||  ||||||||||| |||||||||||    
T  28937498 ccacctaaaacagaccccttcacgaaagtgaccactgtaaaaacgatatccaataccacccatcgccactactcacc 28937574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 33143733 - 33143813
Alignment:
Q  22 tcaccacctaaaacagacttattcacgtaaacgaccactgaa-aaacgatatacataaccacccatcgtcactactcaccc 101  Q
    ||||||||||||||| |||  |||||| |||| ||||||||| ||||||||| ||   ||| || ||||||||||||||||    
T  33143733 tcaccacctaaaacaaactccttcacgaaaaccaccactgaacaaacgatatccaaccccatccgtcgtcactactcaccc 33143813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 17720503 - 17720626
Alignment:
Q  19 acatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctct 118  Q
    ||||||| |||||||||| |||  |||||  ||| |||| || ||||| |||||||||||||||  |||||||||||||||||| |||  | ||| ||||    
T  17720503 acatcactacctaaaacaaactccttcaccaaaa-gacctctaaaaaaagatatacataaccacatatcgtcactactcaccccaaaaataaacccctct 17720601  T
Q  119 aaatgaaattctcgatcctcatcac 143  Q
    ||||||||  |||  ||||||||||    
T  17720602 aaatgaaacactccgtcctcatcac 17720626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 10248349 - 10248430
Alignment:
Q  22 tcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacccc 102  Q
    ||||||||||||||| |||  |||||| |||||||||||| |||||||| || |   | |||||||||||||||||||||||    
T  10248349 tcaccacctaaaacaaactccttcacgaaaacgaccactgtaaaaacgacatcccacaacacccatcgtcactactcacccc 10248430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 227
Target Start/End: Original strand, 17656906 - 17656992
Alignment:
Q  141 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 227  Q
    |||||||||||| |||| || ||||| ||| |||  |||| ||||||| |||  |||||||| || ||||||||| |||||||||||    
T  17656906 caccaaagttgagccacctctgaaaagctcctatatgaaagatcattcagcttccaccacctatcgacctccgatccaccgaaagaa 17656992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 109
Target Start/End: Original strand, 12197857 - 12197945
Alignment:
Q  22 tcaccacctaaaacagacttattcacgtaaacgaccactgaaaa-acgatatacataaccacccatcgtcactactcaccccgaaagaa 109  Q
    |||||||||| |||||||   |||| | | ||||||||| |||| ||||||| ||  ||||||| ||||||||||||||||| ||||||    
T  12197857 tcaccacctacaacagacgccttcatgaacacgaccactaaaaaaacgatatccagcaccacccgtcgtcactactcacccccaaagaa 12197945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 109
Target Start/End: Original strand, 12442285 - 12442373
Alignment:
Q  22 tcaccacctaaaacagacttattcacgtaaacgaccactgaaaa-acgatatacataaccacccatcgtcactactcaccccgaaagaa 109  Q
    |||||||||| |||||||   |||| | | ||||||||| |||| ||||||| ||  ||||||| ||||||||||||||||| ||||||    
T  12442285 tcaccacctacaacagacgccttcatgaacacgaccactaaaaaaacgatatccagcaccacccgtcgtcactactcacccccaaagaa 12442373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 152
Target Start/End: Complemental strand, 15906978 - 15906839
Alignment:
Q  12 gagatggacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaaga 111  Q
    ||||| |||||||||||| ||||||||    |||||| ||||||||||||||||||  ||| |||||||||   | | ||||||||| ||| ||| || |    
T  15906978 gagatagacatcaccaccaaaaacagatcccttcacg-aaacgaccactgaaaaacagtatccataaccacatgttgccactactcatcccaaaataaca 15906880  T
Q  112 ccgctctaaatgaaattctcgatcctcatcaccaaagttga 152  Q
    || |||||||| |||  | |  ||||||||||| |||||||    
T  15906879 cctctctaaataaaacacactgtcctcatcacctaagttga 15906839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 58430 - 58218
Alignment:
Q  19 acatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaac-gatatacataaccacccatcgtcactactcaccccgaaag---aagaccg 114  Q
    ||||||||||| ||||||||||  |||||| ||||||||| || ||||| ||||| ||  || |||| |||||||||||||| || ||||   || ||      
T  58430 acatcaccaccaaaaacagactccttcacgaaaacgaccattgtaaaactgatatccaacactacccgtcgtcactactcacacccaaagaacaacactc 58331  T
Q  115 ctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccga 214  Q
    ||| |||| ||| ||||  |||  | |||||||| ||| |||||| |||||| ||| ||| ||||| || |||| |||  || || ||||| ||||||||    
T  58330 ctcaaaattaaactctcagtcccgaacaccaaagctgagccacattcgaaaagctcttatccgaaagataattcagcttccatcatctctcgacctccga 58231  T
Q  215 tacaccgaaagaa 227  Q
    | |||||||||||    
T  58230 tccaccgaaagaa 58218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 37005 - 36920
Alignment:
Q  22 tcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaa 109  Q
    |||||||||||||||||||  |||||| |||| ||||||| |||||||| || ||  |||| ||| |||||||||||||||| ||||||    
T  37005 tcaccacctaaaacagactccttcacg-aaaccaccactgtaaaaacgacatcca--accatccaccgtcactactcacccccaaagaa 36920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University