View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_252 (Length: 256)
Name: NF9839A_low_252
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_252 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 27 - 220
Target Start/End: Original strand, 29776282 - 29776475
Alignment:
| Q |
27 |
actaaacagtgaacaagactaacacattcataaattagctaaaacattcatacaaaccagagtttagaggtaatccacaaatcttcgcgcttcactacgc |
126 |
Q |
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| T |
29776282 |
actaaacagtgaacaagactaacacattcataaattagctaaaacattcatacaaaccagagtttagaggtaatccacaaatcttcgcgcttcactacgc |
29776381 |
T |
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| Q |
127 |
cctcatccaacaacttcttcaacaccaagccaatctgcaaacaagagaagaaatcaatgaatcatttccttcacatattatatgcattaacatt |
220 |
Q |
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| T |
29776382 |
cctcatcgaacaacttcttcaacaccaagccaatctgcaaacaagagaagaaatcaatgaatcatttccttcacatattatatgcattaacatt |
29776475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 29786681 - 29786751
Alignment:
| Q |
78 |
acaaaccagagtttagaggtaatccacaaatcttcgcgcttcactacgccctcatccaacaacttcttcaa |
148 |
Q |
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| T |
29786681 |
acaaaccagagtttagaggtaatccacaaatcttcacgtttcactacgccttcggcaaacaatttcttcaa |
29786751 |
T |
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