View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9839A_low_254 (Length: 256)
Name: NF9839A_low_254
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_254 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 13 - 246
Target Start/End: Complemental strand, 8705652 - 8705419
Alignment:
| Q |
13 |
gggttcaaagttcaaaatttcaaacaatgaatccaataaacatcaaattacagaacagccaatcagagaggaaaattattaaatcctggataaactcatg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8705652 |
gggttcaaagttcaaaatttcaaacaatgaatccaataaacatcaaattacagaacagccaatcagagaggaaaattattaaatcctggataaactcatg |
8705553 |
T |
|
| Q |
113 |
ttttgtcatactcatttaaatgaataaataaaaactcaaataaactcatttaaagcctttaatgtaacaaaacaaaccttgtcatcttcaaaggtggtat |
212 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8705552 |
ttttgtcatactcatttaaataaataaataaaaactcaaataaactcatttaaagcctttattgtaacaaaacaaaccttgtcatcttcaaaggtggtat |
8705453 |
T |
|
| Q |
213 |
catgatattcatgaatcacccagctgcttttaac |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
8705452 |
catgatattcatgaatcacccagctgcttttaac |
8705419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 118 - 246
Target Start/End: Original strand, 14372181 - 14372308
Alignment:
| Q |
118 |
tcatactcatttaaatgaataaataaaaactcaaataaactcatttaaagcctttaatgtaacaaaacaaaccttgtcatcttcaaaggtggtatcatga |
217 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
14372181 |
tcatactcatttaaataaataaataataactcaaataaactcatttaaaacctttattgtaacaaaacaaacctggt-atcttcaaaggtggtatcatga |
14372279 |
T |
|
| Q |
218 |
tattcatgaatcacccagctgcttttaac |
246 |
Q |
| |
|
|||||||||||||||| |||||||||||| |
|
|
| T |
14372280 |
tattcatgaatcacccggctgcttttaac |
14372308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 246
Target Start/End: Complemental strand, 8691210 - 8691139
Alignment:
| Q |
175 |
tgtaacaaaacaaaccttgtcatcttcaaaggtggtatcatgatattcatgaatcacccagctgcttttaac |
246 |
Q |
| |
|
||||||||||||||||| || ||| | |||||||| | |||||||||||||||||||||| |||||||||| |
|
|
| T |
8691210 |
tgtaacaaaacaaacctggttatcatgaaaggtggcagaatgatattcatgaatcacccagttgcttttaac |
8691139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 100
Target Start/End: Complemental strand, 8724105 - 8724029
Alignment:
| Q |
24 |
tcaaaatttcaaacaatgaatccaataaacatcaaattacagaacagccaatcagagaggaaaattattaaatcctg |
100 |
Q |
| |
|
||||| ||||||| |||||||||||| | | ||||||| |||||||||| |||||| | |||| ||| |||||||| |
|
|
| T |
8724105 |
tcaaattttcaaagaatgaatccaatcatcttcaaatttcagaacagcctatcagataagaaatatatcaaatcctg |
8724029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University