View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_256 (Length: 255)
Name: NF9839A_low_256
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_256 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 68 - 246
Target Start/End: Complemental strand, 6261361 - 6261185
Alignment:
| Q |
68 |
cttagttacacttaaagttcctcacctctcttctaagatgcgtgactgataaacaatataaagcaaagtggtatatttgcaaatacacctaccgtaattc |
167 |
Q |
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| T |
6261361 |
cttagttacacttaaagttcctcacctctcttctacgatgtgtgactgataaacaatatatagcaaagtggtatatttgcaaatacacctaccataattc |
6261262 |
T |
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| Q |
168 |
aacaaaaaatagaacctctttatgtcttcatcagttttctatagcaaagtggtacataaagaaaaacaattattttctt |
246 |
Q |
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| T |
6261261 |
aacaaaaaatagaac--ctttttgtcttcatcagttttctatagcaaagtggtacataaagaaaaacaattattttctt |
6261185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 6262527 - 6262476
Alignment:
| Q |
1 |
attatgatttttcaagcttctttacacaactaagacaaatttatgtatacct |
52 |
Q |
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| T |
6262527 |
attatgatttttcaagcttctttacacaattaagacaaatttatgtatacct |
6262476 |
T |
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