View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_258 (Length: 255)
Name: NF9839A_low_258
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_258 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 43777604 - 43777838
Alignment:
| Q |
1 |
attttataacatcccttgacgcaggaacgataatgaaaaatgtctctgaaacatgttctagttaagcattcgaaacgacaattaatcaaaaatgtcgaaa |
100 |
Q |
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| T |
43777604 |
attttataacatcccttgacgcaggaacgataatgaaaaatgtctctgaaacatgttctagttaaacattcgaaacgacaattaataaaaaatgtcgaaa |
43777703 |
T |
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| Q |
101 |
aagcatgagcttgagctacaactagcataatcaccaacatcatcgcaaaacattttttcacatggctcactgccataactctttttaatattttgtaact |
200 |
Q |
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| T |
43777704 |
aagcatcagcttgagttacaactagcataatcaccaacatcatcgcaaaacattttttcacatggctcactgccataactctttttaatatt---taact |
43777800 |
T |
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| Q |
201 |
tttcttaatctccacttaaattctcaactctgtgatgt |
238 |
Q |
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| T |
43777801 |
tttcttaatctccacttaaattctcaactctgtgatgt |
43777838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 32 - 238
Target Start/End: Original strand, 43781181 - 43781384
Alignment:
| Q |
32 |
aatgaaaaatgtctctgaaacatgttctagttaagcattcgaaacgacaattaatcaaaaatgtcgaaaaagcatgagcttgagctacaactagcataat |
131 |
Q |
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| T |
43781181 |
aatggaaaatgtctctaaaacatgttatcgttaaacatccgacacgacattcaat---aaatggcgaaaaagcatgaggttgagttacaactagcataat |
43781277 |
T |
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| Q |
132 |
caccaacatcatcgcaaaacattttttcacatggctcactgccataactctttttaatattttgtaacttttcttaatctccacttaaattctcaactct |
231 |
Q |
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| T |
43781278 |
caccaacatcatcgtaaaacattttttcacttggctcactaccataactctttttaatattttttaacttttcttaatctccactaaaattctcaacttt |
43781377 |
T |
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| Q |
232 |
gtgatgt |
238 |
Q |
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| T |
43781378 |
gtgatgt |
43781384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 43770344 - 43770402
Alignment:
| Q |
180 |
tctttttaatattttgtaacttttcttaatctccacttaaattctcaactctgtgatgt |
238 |
Q |
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| T |
43770344 |
tctttttaatattttttaacttttcttaatcaccactaaaattctcaactttgtgatgt |
43770402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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