View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_259 (Length: 254)
Name: NF9839A_low_259
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_259 |
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Alignment Details
Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 37372412 - 37372290
Alignment:
| Q |
1 |
gtgagattggttacatgaatcaaatgacactataatattatgtcatatatcacatcattctcgaactcatcaatctctaaaa-ttttataatattttctc |
99 |
Q |
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| T |
37372412 |
gtgagattggttacatgaatcaaataacactataatattatgtcatatatcacatcactctcgaactcatcaatctctaaaacttttataataatttctc |
37372313 |
T |
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| Q |
100 |
ttgtagttttcctaaatctccac |
122 |
Q |
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| T |
37372312 |
ttgtagttttcctaaatctccac |
37372290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 141 - 254
Target Start/End: Complemental strand, 37372304 - 37372191
Alignment:
| Q |
141 |
ttcctaaatctccacttgccactgttaatttgactaccatccatctcatttatttccttaatgcaaaatttataggttttgtatgtacataacattattt |
240 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37372304 |
ttcctaaatctccacttgccactagtaatttgacaaccatccatctcatttatttccttaatgcaaaatttataggtcttgtatgtacataacattattt |
37372205 |
T |
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| Q |
241 |
tggtgcggtcttga |
254 |
Q |
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| T |
37372204 |
tggtgcggtcttga |
37372191 |
T |
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