View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9839A_low_26 (Length: 438)

Name: NF9839A_low_26
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9839A_low_26
NF9839A_low_26
[»] chr1 (4 HSPs)
chr1 (4-432)||(7440462-7440894)
chr1 (4-96)||(6397753-6397845)
chr1 (34-82)||(42517120-42517168)
chr1 (34-108)||(41941063-41941137)
[»] chr8 (1 HSPs)
chr8 (4-103)||(4490295-4490394)
[»] chr7 (1 HSPs)
chr7 (23-96)||(24447163-24447236)
[»] chr5 (2 HSPs)
chr5 (4-77)||(19340568-19340641)
chr5 (14-108)||(19276885-19276979)
[»] chr4 (2 HSPs)
chr4 (41-106)||(36010202-36010267)
chr4 (13-107)||(3284201-3284295)
[»] scaffold0154 (1 HSPs)
scaffold0154 (34-77)||(19342-19385)


Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 4 - 432
Target Start/End: Complemental strand, 7440894 - 7440462
Alignment:
Q  4 atagagcggttatagttttgtttttattattgtgatgaattagagtttcggtgttacaaacaatatatatagtattactgctatgattcagttaacaata 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  7440894 atagagcggttatagttttgtttttattattgtgatgaattagagtttcggtgttacaaacaatatatataatattactactatgattcagttaacaata 7440795  T
Q  104 ttacctctgatgagccataatacaaccggcccttgccttctttaatgttttgcatatattaggtatactttaacaacttagaaatcaaaattaaagataa 203  Q
    ||||||||||||||||||| ||| |||| |||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7440794 ttacctctgatgagccatactactaccgccccttgccttatttaatgtcttgcatatattaggtaaactttaacaacttagaaatcaaaattaaagataa 7440695  T
Q  204 tttataacgcttgatttcctcaattcactctagcc----atttaacaaagaagaaaattgtgatgacttataaaggagtcaaagcaatcaatacctaaac 299  Q
    |||||||| ||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7440694 tttataacacttgatttcctcaattcactctagccattaatttaacaaagaagaaaattgtgatgacttataaaggagtcaaagcaatcaatacctaaac 7440595  T
Q  300 atgttttaaatcaaacttgatatcaaaacattggtgctagaaggaggattgagggcaaatgaaccttctaacacctaaatatctttgattgtggggtacg 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  7440594 atgttttaaatcaaacttgatatcaaaacattggtgctagaaggaggattgagggcaaatgaaccttttagcacctaaatatctttgattgtggggtacg 7440495  T
Q  400 attccattacaaaagaaagtctaacagtcttag 432  Q
    |||||||||||||||||||| ||||||||||||    
T  7440494 attccattacaaaagaaagtataacagtcttag 7440462  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 4 - 96
Target Start/End: Original strand, 6397753 - 6397845
Alignment:
Q  4 atagagcggttatagttttgtttttattattgtgatgaattagagtttcggtgttacaaacaatatatatagtattactgctatgattcagtt 96  Q
    ||||||| | ||||||||||||| ||||| ||||||||| ||  ||||| ||||||||| ||||||||||||||||| | |||||||||||||    
T  6397753 atagagcagctatagttttgtttctattactgtgatgaactaaggtttcagtgttacaagcaatatatatagtattattactatgattcagtt 6397845  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 42517168 - 42517120
Alignment:
Q  34 tgtgatgaattagagtttcggtgttacaaacaatatatatagtattact 82  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  42517168 tgtgatgaattagggtttcggtgttacaaacaatatatatagtactact 42517120  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 108
Target Start/End: Complemental strand, 41941137 - 41941063
Alignment:
Q  34 tgtgatgaattagagtttcggtgttacaaacaatatatatagtattactgctatgattcagttaacaatattacc 108  Q
    ||||||||||||| |||||  ||||||||  |||||||||| || |||| ||| ||||||||| |||||||||||    
T  41941137 tgtgatgaattagggtttcaatgttacaagtaatatatatactactactactacgattcagtttacaatattacc 41941063  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 4490394 - 4490295
Alignment:
Q  4 atagagcggttatagttttgtttttattattgtgatgaattagagtttcggtgttacaaacaatatatatagtattactgctatgattcagttaacaata 103  Q
    ||||||| |||||||| |||||| ||||||| ||||||||||  ||||| ||||| ||  |||||||||||||| |||   |||||||||||| ||||||    
T  4490394 atagagcagttatagtcttgtttgtattattatgatgaattaaggtttcagtgttgcatgcaatatatatagtaatacaattatgattcagtttacaata 4490295  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 24447236 - 24447163
Alignment:
Q  23 gtttttattattgtgatgaattagagtttcggtgttacaaacaatatatatagtattactgctatgattcagtt 96  Q
    |||| ||||| ||||||||||| ||||||| || |||||| ||||| ||||| || |||||||| |||||||||    
T  24447236 gtttgtattactgtgatgaatttgagtttcagtattacaagcaatacatataatactactgctacgattcagtt 24447163  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 19340641 - 19340568
Alignment:
Q  4 atagagcggttatagttttgtttttattattgtgatgaattagagtttcggtgttacaaacaatatatatagta 77  Q
    ||||||| | ||||||||  ||||||||  | ||||||||||||||||  ||||||||| ||||||||||||||    
T  19340641 atagagcagatatagtttcatttttattgatatgatgaattagagtttaagtgttacaagcaatatatatagta 19340568  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 19276979 - 19276885
Alignment:
Q  14 tatagttttgtttttattattgtgatgaattagagtttcggtgttacaaacaatatatatagtattactgctatgattcagttaacaatattacc 108  Q
    |||||||| |||| ||||| |||||||| |||| |||||  |||||| | ||||||||||||||  | | ||| ||||||| | |||||||||||    
T  19276979 tatagtttcgtttgtattactgtgatgatttagggtttcaatgttactagcaatatatatagtacaattactacgattcagattacaatattacc 19276885  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 36010267 - 36010202
Alignment:
Q  41 aattagagtttcggtgttacaaacaatatatatagtattactgctatgattcagttaacaatatta 106  Q
    ||||| ||||||  |||||||||||||||||||| || |||| ||| ||||||||| |||||||||    
T  36010267 aattaaagtttcaatgttacaaacaatatatataatactacttctacgattcagttcacaatatta 36010202  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 3284201 - 3284295
Alignment:
Q  13 ttatagttttgtttttattattgtgatgaattagagtttcggtgttacaaacaatatatatagtattactgctatgattcagttaacaatattac 107  Q
    ||||||||  |||||||||| ||||||||||||| ||||  | ||||||| ||| ||||||| || |||| |||  ||| |||| ||||||||||    
T  3284201 ttatagttccgtttttattactgtgatgaattagggttttagcgttacaagcaaaatatatattactactactacaattaagtttacaatattac 3284295  T

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Target: scaffold0154 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 19385 - 19342
Alignment:
Q  34 tgtgatgaattagagtttcggtgttacaaacaatatatatagta 77  Q
    ||||||||||||| |||||  |||||||||||||||||||||||    
T  19385 tgtgatgaattagggtttcactgttacaaacaatatatatagta 19342  T

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