View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9839A_low_262 (Length: 253)

Name: NF9839A_low_262
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9839A_low_262
NF9839A_low_262
[»] chr1 (21 HSPs)
chr1 (4-253)||(35621482-35621740)
chr1 (112-188)||(50804267-50804343)
chr1 (110-188)||(6541007-6541085)
chr1 (114-187)||(16192275-16192348)
chr1 (117-174)||(19464230-19464287)
chr1 (113-188)||(27900933-27901008)
chr1 (114-151)||(28620443-28620480)
chr1 (113-168)||(5529627-5529682)
chr1 (113-152)||(9553114-9553153)
chr1 (113-168)||(30050321-30050376)
chr1 (118-173)||(33747285-33747340)
chr1 (143-186)||(38901483-38901526)
chr1 (114-168)||(2998900-2998954)
chr1 (113-187)||(6728026-6728100)
chr1 (114-168)||(50155532-50155585)
chr1 (104-165)||(5529891-5529952)
chr1 (123-188)||(32670020-32670085)
chr1 (110-187)||(44391534-44391611)
chr1 (114-162)||(3450549-3450597)
chr1 (113-184)||(30519042-30519114)
chr1 (116-152)||(34826834-34826870)
[»] chr8 (14 HSPs)
chr8 (114-188)||(29911607-29911681)
chr8 (116-188)||(42659804-42659876)
chr8 (113-188)||(4586751-4586826)
chr8 (113-188)||(2987175-2987249)
chr8 (113-168)||(21600423-21600478)
chr8 (103-168)||(14532439-14532504)
chr8 (106-170)||(36469582-36469647)
chr8 (114-162)||(12125916-12125964)
chr8 (113-188)||(28802284-28802359)
chr8 (122-188)||(42844833-42844899)
chr8 (124-181)||(24303878-24303935)
chr8 (116-172)||(6915548-6915603)
chr8 (117-188)||(10029007-10029079)
chr8 (104-188)||(34281335-34281419)
[»] chr7 (13 HSPs)
chr7 (114-188)||(39608612-39608686)
chr7 (113-188)||(5358208-5358283)
chr7 (113-188)||(34703630-34703704)
chr7 (116-168)||(29196774-29196826)
chr7 (114-188)||(8062901-8062975)
chr7 (103-151)||(1052418-1052466)
chr7 (113-164)||(1247523-1247574)
chr7 (112-170)||(30601317-30601375)
chr7 (126-188)||(45540036-45540098)
chr7 (112-188)||(6983276-6983352)
chr7 (113-168)||(38838676-38838731)
chr7 (116-196)||(40351997-40352077)
chr7 (116-168)||(49078218-49078270)
[»] chr4 (17 HSPs)
chr4 (103-169)||(4161642-4161708)
chr4 (110-188)||(40317791-40317869)
chr4 (110-188)||(40327865-40327943)
chr4 (113-164)||(971870-971921)
chr4 (113-188)||(51151050-51151126)
chr4 (113-168)||(4215197-4215252)
chr4 (113-188)||(12034383-12034458)
chr4 (113-188)||(52701021-52701096)
chr4 (117-188)||(55132571-55132642)
chr4 (119-193)||(6364962-6365036)
chr4 (114-188)||(35255494-35255568)
chr4 (122-188)||(46433620-46433686)
chr4 (111-188)||(27146289-27146366)
chr4 (113-166)||(27146441-27146494)
chr4 (104-137)||(27298579-27298612)
chr4 (112-188)||(9297353-9297428)
chr4 (104-148)||(14945392-14945436)
[»] chr2 (10 HSPs)
chr2 (114-188)||(6788517-6788591)
chr2 (113-181)||(7165776-7165844)
chr2 (104-188)||(43503023-43503107)
chr2 (117-188)||(40124265-40124336)
chr2 (5-67)||(15816892-15816954)
chr2 (114-188)||(33583340-33583414)
chr2 (110-170)||(6923722-6923783)
chr2 (110-170)||(28779698-28779759)
chr2 (114-166)||(18903200-18903252)
chr2 (113-153)||(34883934-34883974)
[»] chr6 (6 HSPs)
chr6 (110-188)||(26368927-26369005)
chr6 (116-168)||(34937450-34937502)
chr6 (113-188)||(19264752-19264826)
chr6 (114-168)||(21021124-21021178)
chr6 (127-188)||(27100520-27100581)
chr6 (104-188)||(27100715-27100799)
[»] chr5 (10 HSPs)
chr5 (118-188)||(37181349-37181419)
chr5 (110-188)||(16127051-16127129)
chr5 (113-154)||(30118489-30118530)
chr5 (117-188)||(22391694-22391765)
chr5 (106-153)||(27554339-27554386)
chr5 (114-168)||(42420559-42420613)
chr5 (114-168)||(42932806-42932860)
chr5 (104-137)||(6645714-6645747)
chr5 (112-188)||(6217672-6217748)
chr5 (112-188)||(8206322-8206398)
[»] chr3 (19 HSPs)
chr3 (110-188)||(284321-284399)
chr3 (106-197)||(3941834-3941928)
chr3 (104-168)||(5800176-5800240)
chr3 (114-188)||(26483038-26483112)
chr3 (110-168)||(46848397-46848455)
chr3 (113-173)||(47199723-47199783)
chr3 (113-184)||(47944579-47944650)
chr3 (122-188)||(20936561-20936627)
chr3 (114-188)||(24255221-24255295)
chr3 (122-188)||(29079310-29079376)
chr3 (118-188)||(43837084-43837154)
chr3 (143-188)||(30669358-30669403)
chr3 (155-188)||(34294177-34294210)
chr3 (119-188)||(36080823-36080892)
chr3 (123-188)||(37326593-37326657)
chr3 (112-153)||(38989765-38989806)
chr3 (114-182)||(28961895-28961963)
chr3 (104-152)||(45681408-45681456)
chr3 (124-188)||(51889758-51889822)
[»] scaffold0329 (2 HSPs)
scaffold0329 (111-168)||(6217-6274)
scaffold0329 (112-188)||(6470-6546)
[»] scaffold0053 (1 HSPs)
scaffold0053 (110-182)||(14747-14819)


Alignment Details
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 4 - 253
Target Start/End: Original strand, 35621482 - 35621740
Alignment:
Q  4 gactgatatgaaaataagtaagcatgttaaaggactgatataacagaattaacaaagcattttagtgtgacagacttttttgaataacgaagaacacaat 103  Q
    |||||||||||||||||||||| || |||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  35621482 gactgatatgaaaataagtaagtatattaaaggactaatatgacagaattaacaaagcattttagtgtgagagacttttttgaataatgaagaacacaat 35621581  T
Q  104 ataattaaggactattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactattctctcttttgaaata 203  Q
    |||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||    
T  35621582 ataattaaggactattttaaaaatttaatacatttaaaaactattgtgacaactcgttacacatttaaggatcaaaatgactattctctctttcaaaata 35621681  T
Q  204 ttt---------caaaagttgcactaagatggtttagtgattctttctgcatttatata 253  Q
    |||         ||||||||||||||||||| |||||||||||||| ||| ||||||||    
T  35621682 tttcaaaagttgcaaaagttgcactaagatgatttagtgattctttatgcctttatata 35621740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 50804343 - 50804267
Alignment:
Q  112 ggactattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    |||||||||||||||||||| ||||| ||  ||||||||||| |||||||||||||| ||||| |||||| ||||||    
T  50804343 ggactattttaaaattttgacacattcaaagactattgtgaccactcgttacacattcaaggactaaaataactatt 50804267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 188
Target Start/End: Complemental strand, 6541085 - 6541007
Alignment:
Q  110 aaggactattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    |||||||||||  ||||||||||||||| ||| |||||| |||| | |||||||||||| | |||||||||||||||||    
T  6541085 aaggactatttggaaattttgatacattaaaggactattatgactattcgttacacattcagggattaaaatgactatt 6541007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 187
Target Start/End: Original strand, 16192275 - 16192348
Alignment:
Q  114 actattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactat 187  Q
    |||||||||||||||||||||||| ||| | |||| |||| ||| |||||||||| ||| | ||||||||||||    
T  16192275 actattttaaaattttgatacattgaaggaatattatgactacttgttacacattcaagtactaaaatgactat 16192348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 174
Target Start/End: Complemental strand, 19464287 - 19464230
Alignment:
Q  117 attttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaagga 174  Q
    ||||| ||||||||||||||| ||| ||||||||||| ||| ||||||||||||||||    
T  19464287 atttttaaattttgatacattgaaggactattgtgactacttgttacacatttaagga 19464230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 188
Target Start/End: Original strand, 27900933 - 27901008
Alignment:
Q  113 gactattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    |||||||||||| |||| ||||||| ||| |||||| |||| |||| ||||||||| |||||| ||| ||||||||    
T  27900933 gactattttaaattttttatacattgaaggactattctgactactcattacacattcaaggatcaaattgactatt 27901008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 151
Target Start/End: Complemental strand, 28620480 - 28620443
Alignment:
Q  114 actattttaaaattttgatacatttaagaactattgtg 151  Q
    |||||||||||||||||||||||| |||||||||||||    
T  28620480 actattttaaaattttgatacattaaagaactattgtg 28620443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 168
Target Start/End: Complemental strand, 5529682 - 5529627
Alignment:
Q  113 gactattttaaaattttgatacatttaagaactattgtgacaactcgttacacatt 168  Q
    ||||||||||||| ||||||| ||| ||| |||| ||||||||||| |||||||||    
T  5529682 gactattttaaaactttgatatattgaaggactactgtgacaactccttacacatt 5529627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 152
Target Start/End: Original strand, 9553114 - 9553153
Alignment:
Q  113 gactattttaaaattttgatacatttaagaactattgtga 152  Q
    ||||||||||||| ||||||||||| ||||||||||||||    
T  9553114 gactattttaaaagtttgatacattgaagaactattgtga 9553153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 168
Target Start/End: Complemental strand, 30050376 - 30050321
Alignment:
Q  113 gactattttaaaattttgatacatttaagaactattgtgacaactcgttacacatt 168  Q
    ||||||||||||||| ||||||||| ||||| ||||||||| | | ||||||||||    
T  30050376 gactattttaaaattatgatacattgaagaattattgtgactatttgttacacatt 30050321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 33747340 - 33747285
Alignment:
Q  118 ttttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaagg 173  Q
    |||| |||||| |||||||| ||||||||||||||| ||| |||||||||| ||||    
T  33747340 ttttgaaatttcgatacattgaagaactattgtgactacttgttacacattcaagg 33747285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 38901526 - 38901483
Alignment:
Q  143 actattgtgacaactcgttacacatttaaggattaaaatgacta 186  Q
    ||||||||||| ||||||||||| ||||||||| ||||||||||    
T  38901526 actattgtgactactcgttacacgtttaaggatcaaaatgacta 38901483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 168
Target Start/End: Complemental strand, 2998954 - 2998900
Alignment:
Q  114 actattttaaaattttgatacatttaagaactattgtgacaactcgttacacatt 168  Q
    ||||||||||||||||||||||||||   ||||||||||  ||| ||||||||||    
T  2998954 actattttaaaattttgatacatttacagactattgtgattacttgttacacatt 2998900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 187
Target Start/End: Original strand, 6728026 - 6728100
Alignment:
Q  113 gactattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactat 187  Q
    |||||||||  ||||||||| |||| ||| ||||||||||| | |||||||||||| | |||  |||||||||||    
T  6728026 gactattttggaattttgattcattgaaggactattgtgactattcgttacacattcagggacgaaaatgactat 6728100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 168
Target Start/End: Complemental strand, 50155585 - 50155532
Alignment:
Q  114 actattttaaaattttgatacatttaagaactattgtgacaactcgttacacatt 168  Q
    |||||||||||||||||||||||| || ||||||| |||| |||| |||||||||    
T  50155585 actattttaaaattttgatacattgaa-aactattatgactactcattacacatt 50155532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 5529891 - 5529952
Alignment:
Q  104 ataattaaggactattttaaaattttgatacatttaagaactattgtgacaactcgttacac 165  Q
    ||||||| ||| |||||||||||||||||| ||| ||| | |||| |||| |||||||||||    
T  5529891 ataattagggattattttaaaattttgatatattaaaggattattatgactactcgttacac 5529952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 188
Target Start/End: Original strand, 32670020 - 32670085
Alignment:
Q  123 aaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    |||||| ||| |||| ||| ||||||||||  |||||||||||||| | |||| ||||||||||||    
T  32670020 aaatttcgatccattgaaggactattgtgaatactcgttacacattcagggatcaaaatgactatt 32670085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 187
Target Start/End: Complemental strand, 44391611 - 44391534
Alignment:
Q  110 aaggactattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactat 187  Q
    ||||||||||||| |||||||||| ||| ||  |||||| |||| ||||| |||||||||| |||  |||||| ||||    
T  44391611 aaggactattttagaattttgatatattgaatgactattctgactactcgctacacatttagggaacaaaatgtctat 44391534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 3450549 - 3450597
Alignment:
Q  114 actattttaaaattttgatacatttaagaactattgtgacaactcgtta 162  Q
    |||||||||||||||||||||||| |||| |||| ||||| | ||||||    
T  3450549 actattttaaaattttgatacattaaagagctatggtgactaatcgtta 3450597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 30519114 - 30519042
Alignment:
Q  113 gactattttaaaattttgatacatttaagaactattgt-gacaactcgttacacatttaaggattaaaatgac 184  Q
    ||||||||| |||||| |||||||||||| |||||||| ||| | | |||||||||| |||||  ||||||||    
T  30519114 gactattttgaaatttcgatacatttaaggactattgtggactatttgttacacattcaaggaccaaaatgac 30519042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 34826870 - 34826834
Alignment:
Q  116 tattttaaaattttgatacatttaagaactattgtga 152  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  34826870 tattttaaaattttgatacattgaaggactattgtga 34826834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 188
Target Start/End: Original strand, 29911607 - 29911681
Alignment:
Q  114 actattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    |||||||||||||||||||||||| || |||||||||| | |||||||||||||| |  ||| ||||||||||||    
T  29911607 actattttaaaattttgatacattaaacaactattgtggccactcgttacacattcagagatgaaaatgactatt 29911681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 42659876 - 42659804
Alignment:
Q  116 tattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    |||||||||| ||| ||||||| ||||||||||||||| ||||  |||| |||||||||||||| ||||||||    
T  42659876 tattttaaaaattttatacattaaagaactattgtgactactcactacatatttaaggattaaattgactatt 42659804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 188
Target Start/End: Complemental strand, 4586826 - 4586751
Alignment:
Q  113 gactattttaaaattttgatacatttaaga-actattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    ||||||||||||||||| ||||||| |||| |||||||| || |||||||||||||| |||||| ||||| ||||||    
T  4586826 gactattttaaaattttaatacatt-aagagactattgtaactactcgttacacattcaaggatcaaaataactatt 4586751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 188
Target Start/End: Original strand, 2987175 - 2987249
Alignment:
Q  113 gactattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    ||||||||||||||||||||||| || |||||||||||||| | ||||| |||||||| | |  ||||||||||||    
T  2987175 gactattttaaaattttgataca-ttgagaactattgtgactaatcgtttcacatttaggaaccaaaatgactatt 2987249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 168
Target Start/End: Complemental strand, 21600478 - 21600423
Alignment:
Q  113 gactattttaaaattttgatacatttaagaactattgtgacaactcgttacacatt 168  Q
    ||||||||||||||||||||||||| | | |||||||||||||||| || ||||||    
T  21600478 gactattttaaaattttgatacattaagggactattgtgacaactcattgcacatt 21600423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 168
Target Start/End: Original strand, 14532439 - 14532504
Alignment:
Q  103 tataattaaggactattttaaaattttgatacatttaaga-actattgtgacaactcgttacacatt 168  Q
    |||||||||||| |||||||||||||||||| | |||||| ||||||||||| |||| |||||||||    
T  14532439 tataattaaggattattttaaaattttgatata-ttaagagactattgtgactactcattacacatt 14532504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 170
Target Start/End: Original strand, 36469582 - 36469647
Alignment:
Q  106 aattaaggactattttaaaattttgatacatt-taagaactattgtgacaactcgttacacattta 170  Q
    ||||||||||||||||||||||||||||||||  ||||| |||| |||| |||| ||||| |||||    
T  36469582 aattaaggactattttaaaattttgatacattaaaagaattattatgactactcattacatattta 36469647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 12125916 - 12125964
Alignment:
Q  114 actattttaaaattttgatacatttaagaactattgtgacaactcgtta 162  Q
    |||||||||||||||| |||||||||| |||||||||||| ||| ||||    
T  12125916 actattttaaaattttcatacatttaaaaactattgtgaccacttgtta 12125964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 188
Target Start/End: Complemental strand, 28802359 - 28802284
Alignment:
Q  113 gactattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    ||||||||||||||||||||||||  | | ||||||||||| | | |||||||||| |  || |||||||||||||    
T  28802359 gactattttaaaattttgatacatcgatggactattgtgactatttgttacacattcagcgactaaaatgactatt 28802284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 188
Target Start/End: Complemental strand, 42844899 - 42844833
Alignment:
Q  122 aaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    |||||||||||||||| ||| || |||||||| | |||||| ||| ||| |||| ||||||||||||    
T  42844899 aaaattttgatacattgaaggacaattgtgaccaatcgttatacaattatggatcaaaatgactatt 42844833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 24303935 - 24303878
Alignment:
Q  124 aattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaat 181  Q
    |||||||||||||||||| ||||| |||||||| | ||||||||| | ||| ||||||    
T  24303935 aattttgatacatttaaggactatagtgacaacgccttacacattcagggactaaaat 24303878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 6915548 - 6915603
Alignment:
Q  116 tattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaag 172  Q
    |||||||||||||||||||| ||||| ||||||||||  |||  |||||||||||||    
T  6915548 tattttaaaattttgataca-ttaaggactattgtgattacttattacacatttaag 6915603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 10029007 - 10029079
Alignment:
Q  117 attttaaaattttgatacatttaagaactattgtgacaactcgttacacat-ttaaggattaaaatgactatt 188  Q
    ||||||||||||||||||||| ||  |||||||| || ||||||| ||||| || | ||| ||||||||||||    
T  10029007 attttaaaattttgatacattgaatgactattgtaactactcgttgcacatatttaagatcaaaatgactatt 10029079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 188
Target Start/End: Complemental strand, 34281419 - 34281335
Alignment:
Q  104 ataattaaggactattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    ||||| ||||||||||||||||||||| |||||| ||  | |||| ||||  || |||||| |||||  || |||||||||||||    
T  34281419 ataatcaaggactattttaaaattttggtacattgaaatattattatgactgcttgttacaaatttagagactaaaatgactatt 34281335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 188
Target Start/End: Original strand, 39608612 - 39608686
Alignment:
Q  114 actattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    |||||||||||||||||||||||| || ||||||||| || |||| ||||||||| ||||| |||||||| ||||    
T  39608612 actattttaaaattttgatacattgaaaaactattgtaactactccttacacattcaaggactaaaatgattatt 39608686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 113 - 188
Target Start/End: Complemental strand, 5358283 - 5358208
Alignment:
Q  113 gactattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    ||||||||||||||||||||||||| ||| |||||||| || | || ||||||||||| |||| ||| ||||||||    
T  5358283 gactattttaaaattttgatacattgaaggactattgtaactattcattacacatttagggatgaaagtgactatt 5358208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 113 - 188
Target Start/End: Complemental strand, 34703704 - 34703630
Alignment:
Q  113 gactattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    |||||||||||||||| |||||||| | | ||||||||||| |||||||| ||||||| |||| ||||||||||||    
T  34703704 gactattttaaaattt-gatacattgatggactattgtgactactcgttatacatttatggatcaaaatgactatt 34703630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 29196826 - 29196774
Alignment:
Q  116 tattttaaaattttgatacatttaagaactattgtgacaactcgttacacatt 168  Q
    |||||||||||||||||||||| || |||||||||||| | ||||||||||||    
T  29196826 tattttaaaattttgatacattgaaaaactattgtgactattcgttacacatt 29196774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 188
Target Start/End: Original strand, 8062901 - 8062975
Alignment:
Q  114 actattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    |||||||||||||||| ||||||| |   ||||||||||| |||||||||||||| |||||  ||||| ||||||    
T  8062901 actattttaaaattttaatacattgacagactattgtgactactcgttacacattcaaggaccaaaataactatt 8062975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 1052466 - 1052418
Alignment:
Q  103 tataattaaggactattttaaaattttgatacatttaagaactattgtg 151  Q
    |||||||||| |||||||||||||||||||||||| || || |||||||    
T  1052466 tataattaagaactattttaaaattttgatacattaaaaaattattgtg 1052418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 164
Target Start/End: Complemental strand, 1247574 - 1247523
Alignment:
Q  113 gactattttaaaattttgatacatttaagaactattgtgacaactcgttaca 164  Q
    ||||||||||||||||| ||||||| |  |||||||||||| ||||||||||    
T  1247574 gactattttaaaattttaatacattaagaaactattgtgactactcgttaca 1247523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 30601375 - 30601317
Alignment:
Q  112 ggactattttaaaattttgatacatttaagaactattgtgacaactcgttacacattta 170  Q
    |||| ||||||||||||||| ||||| |||||||||| |||| | || |||||||||||    
T  30601375 ggacaattttaaaattttgaaacattgaagaactattatgactaatcattacacattta 30601317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 188
Target Start/End: Original strand, 45540036 - 45540098
Alignment:
Q  126 ttttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    |||||||||||||| | ||||||||| |||||||||| ||||||| |||  ||||||| ||||    
T  45540036 ttttgatacatttagggactattgtgtcaactcgttatacatttagggaccaaaatgattatt 45540098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 6983352 - 6983276
Alignment:
Q  112 ggactattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    |||||| |||||||||||||| |||| ||| |||||||||   |||| ||||||||  | ||| |||||||||||||    
T  6983352 ggactactttaaaattttgattcattgaaggactattgtggttactctttacacatccatggactaaaatgactatt 6983276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 38838676 - 38838731
Alignment:
Q  113 gactattttaaaattttgatacattta-agaactattgtgacaactcgttacacatt 168  Q
    ||||||||||||||||| ||||||| | |||| ||||||||| ||||||||||||||    
T  38838676 gactattttaaaattttaatacattgatagaa-tattgtgactactcgttacacatt 38838731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 40352077 - 40351997
Alignment:
Q  116 tattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactattctctcttt 196  Q
    |||||| ||||||||||||||| |||||||||||||   | |||||||||   || |||  |||||||||||| |||||||    
T  40352077 tattttgaaattttgatacattgaagaactattgtgttgattcgttacacgcgtatggaccaaaatgactattatctcttt 40351997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 49078218 - 49078270
Alignment:
Q  116 tattttaaaattttgatacatttaagaactattgtgacaactcgttacacatt 168  Q
    |||||| ||||||||||||||| | |||||||||| || |||| |||||||||    
T  49078218 tatttttaaattttgatacattgaggaactattgtaactactcattacacatt 49078270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 169
Target Start/End: Complemental strand, 4161708 - 4161642
Alignment:
Q  103 tataattaaggactattttaaaattttgatacatttaagaactattgtgacaactcgttacacattt 169  Q
    |||||| |||||||||||| ||||||||||||||| ||| ||||||||||| |||| ||||||||||    
T  4161708 tataatcaaggactattttgaaattttgatacattgaaggactattgtgactactcattacacattt 4161642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 188
Target Start/End: Original strand, 40317791 - 40317869
Alignment:
Q  110 aaggactattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    |||||||||||||||| ||| ||||||| | ||||||||||||||| || ||||||||| | |||| ||||||||||||    
T  40317791 aaggactattttaaaaattttatacattgatgaactattgtgacaattcattacacattcatggatcaaaatgactatt 40317869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 188
Target Start/End: Original strand, 40327865 - 40327943
Alignment:
Q  110 aaggactattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    |||||||||||||||| ||| ||||||| | ||||||||||||||| || ||||||||| | |||| ||||||||||||    
T  40327865 aaggactattttaaaaattttatacattgatgaactattgtgacaattcattacacattcatggatcaaaatgactatt 40327943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 164
Target Start/End: Complemental strand, 971921 - 971870
Alignment:
Q  113 gactattttaaaattttgatacatttaagaactattgtgacaactcgttaca 164  Q
    ||||||||| ||||||||||||||| ||  ||||||||||||||||||||||    
T  971921 gactattttgaaattttgatacattgaatgactattgtgacaactcgttaca 971870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 188
Target Start/End: Original strand, 51151050 - 51151126
Alignment:
Q  113 gactattttaaaattttgatacattta-agaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    ||||||||||||||||| ||||||| | |||  ||||||||| |||||||||||||| |||||  ||||| ||||||    
T  51151050 gactattttaaaattttaatacattgagagatttattgtgactactcgttacacattcaaggaccaaaataactatt 51151126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 4215197 - 4215252
Alignment:
Q  113 gactattttaaaattttgatacatttaagaactattgtgacaactcgttacacatt 168  Q
    |||||||||||||||||||| |||| | | ||||||| ||| ||||||||||||||    
T  4215197 gactattttaaaattttgattcattgagggactattgcgactactcgttacacatt 4215252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 188
Target Start/End: Complemental strand, 12034458 - 12034383
Alignment:
Q  113 gactattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    |||||||||  |||||||||||||| | | ||||||||||| |||||||| ||||| | |||  ||||||||||||    
T  12034458 gactattttgcaattttgatacattgagggactattgtgactactcgttatacattcagggaccaaaatgactatt 12034383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 188
Target Start/End: Original strand, 52701021 - 52701096
Alignment:
Q  113 gactattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    |||||||||||||||| |||||| ||||||| |||| |||  | | |||||||||| ||| | |||||||||||||    
T  52701021 gactattttaaaatttagatacagttaagaattattatgattatttgttacacattcaagtaataaaatgactatt 52701096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 55132571 - 55132642
Alignment:
Q  117 attttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    ||||||||||||||||||||| || ||||||| ||||  ||| ||||||||| |  ||| ||||||||||||    
T  55132571 attttaaaattttgatacattgaaaaactattttgactgctccttacacattcagagatcaaaatgactatt 55132642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 193
Target Start/End: Original strand, 6364962 - 6365036
Alignment:
Q  119 tttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactattctctc 193  Q
    |||||||||||| |||||| ||  | ||||||||| ||| |||||||||| || ||||||||||| |||| ||||    
T  6364962 tttaaaattttgttacattaaaagattattgtgactactagttacacattcaaagattaaaatgattattatctc 6365036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 188
Target Start/End: Original strand, 35255494 - 35255568
Alignment:
Q  114 actattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    |||||||||||||||| ||||||| |   ||||||||||| |||||||||| ||||| |||  ||||| ||||||    
T  35255494 actattttaaaattttaatacattgagagactattgtgactactcgttacatatttagggaccaaaataactatt 35255568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 188
Target Start/End: Original strand, 46433620 - 46433686
Alignment:
Q  122 aaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    |||||||||||||||| ||| || |||||||| |||||||| ||| ||| |||  ||||||||||||    
T  46433620 aaaattttgatacattgaaggacaattgtgaccactcgttaaacaattatggaccaaaatgactatt 46433686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 27146366 - 27146289
Alignment:
Q  111 aggactattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    ||||||||||||||||||| ||||||| | |||||||  |||| |||| |||||| || | | || ||||||||||||    
T  27146366 aggactattttaaaattttaatacattgatgaactatcatgactactccttacacgttcatgaatcaaaatgactatt 27146289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 166
Target Start/End: Original strand, 27146441 - 27146494
Alignment:
Q  113 gactattttaaaattttgatacatttaagaactattgtgacaactcgttacaca 166  Q
    |||||||||||||||| |||||||| | ||| ||||||||  ||||||||||||    
T  27146441 gactattttaaaatttcgatacattaatgaattattgtgattactcgttacaca 27146494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 137
Target Start/End: Complemental strand, 27298612 - 27298579
Alignment:
Q  104 ataattaaggactattttaaaattttgatacatt 137  Q
    |||||||| |||||||||||||||||||||||||    
T  27298612 ataattaaagactattttaaaattttgatacatt 27298579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 9297428 - 9297353
Alignment:
Q  112 ggactattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    ||||||||||||||||| |||| ||| ||| ||||||||| | | | | |||||||| |||||| ||||||||||||    
T  9297428 ggactattttaaaatttcgatatattgaaggactattgtggcta-ttggtacacattcaaggatcaaaatgactatt 9297353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 14945436 - 14945392
Alignment:
Q  104 ataattaaggactattttaaaattttgatacatttaagaactatt 148  Q
    |||||||| ||||||||||||||||||||| ||| ||| ||||||    
T  14945436 ataattaaagactattttaaaattttgataaattgaaggactatt 14945392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 188
Target Start/End: Original strand, 6788517 - 6788591
Alignment:
Q  114 actattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    |||||||||||||||||||||||| ||  |||||| |||| | | ||||||||||||||||| ||||||||||||    
T  6788517 actattttaaaattttgatacattgaatgactattatgactatttgttacacatttaaggatgaaaatgactatt 6788591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 7165776 - 7165844
Alignment:
Q  113 gactattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaat 181  Q
    ||||||||||||||||| ||||||| ||  ||||||||||| |||||||||||||||| |||| |||||    
T  7165776 gactattttaaaattttaatacattgaaagactattgtgactactcgttacacatttagggatcaaaat 7165844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 188
Target Start/End: Original strand, 43503023 - 43503107
Alignment:
Q  104 ataattaaggactattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    ||||||| |||||||||||||||||| ||||||| || ||||||||| || |||||||||| ||| | |||  ||||||||||||    
T  43503023 ataattagggactattttaaaattttaatacattgaaaaactattgtaactactcgttacatattaagggaaaaaaatgactatt 43503107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 40124336 - 40124265
Alignment:
Q  117 attttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    |||||||||||| |||||||| | | ||||||||||| |||||||||||||| |||||  ||| ||||||||    
T  40124336 attttaaaatttcgatacattaatggactattgtgactactcgttacacattcaaggaccaaagtgactatt 40124265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 15816954 - 15816892
Alignment:
Q  5 actgatatgaaaataagtaagcatgttaaaggactgatataacagaattaacaaagcatttta 67  Q
    ||||||||||||||||||||| || || ||||||| |||| |||  |||||||||| ||||||    
T  15816954 actgatatgaaaataagtaagtatcttgaaggactaatatgacaatattaacaaagtatttta 15816892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 188
Target Start/End: Complemental strand, 33583414 - 33583340
Alignment:
Q  114 actattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    |||||||||||||||| ||||||| |||||||||||| || |   |||| |||||| |||||  |||||||||||    
T  33583414 actattttaaaattttaatacattgaagaactattgtaactatctgttatacattttaggatctaaatgactatt 33583340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 6923783 - 6923722
Alignment:
Q  110 aaggactattttaaaattttgatacat-ttaagaactattgtgacaactcgttacacattta 170  Q
    |||||||||||||||||||||||||||   ||||||| || |||| |||| |||||||||||    
T  6923783 aaggactattttaaaattttgatacatcaaaagaactcttatgactactcattacacattta 6923722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 28779759 - 28779698
Alignment:
Q  110 aaggactattttaaaattttgatacat-ttaagaactattgtgacaactcgttacacattta 170  Q
    |||||||||||||||||||||||||||   ||||||| || |||| |||| |||||||||||    
T  28779759 aaggactattttaaaattttgatacatcaaaagaactcttatgactactcattacacattta 28779698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 18903200 - 18903252
Alignment:
Q  114 actattttaaaattttgatacatttaagaactattgtgacaactcgttacaca 166  Q
    ||||||||| ||||| |||||||| ||  ||||||||||| ||||||||||||    
T  18903200 actattttagaatttcgatacattgaatgactattgtgactactcgttacaca 18903252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 34883974 - 34883934
Alignment:
Q  113 gactattttaaaattttgatacatttaagaactattgtgac 153  Q
    ||||||||||||||||||||||||| | | |||||||||||    
T  34883974 gactattttaaaattttgatacattgagggactattgtgac 34883934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 188
Target Start/End: Complemental strand, 26369005 - 26368927
Alignment:
Q  110 aaggactattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    ||||||||||||  ||||||||| |||| ||| ||||| ||| | ||||||| ||||||||||||| ||||||||||||    
T  26369005 aaggactattttgcaattttgatgcattgaaggactatcgtggctactcgttccacatttaaggatcaaaatgactatt 26368927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 34937502 - 34937450
Alignment:
Q  116 tattttaaaattttgatacatttaagaactattgtgacaactcgttacacatt 168  Q
    |||||| |||||| |||||||| ||||||||||||||| ||||||||||||||    
T  34937502 tattttgaaatttggatacattgaagaactattgtgactactcgttacacatt 34937450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 188
Target Start/End: Original strand, 19264752 - 19264826
Alignment:
Q  113 gactattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    |||||||||||||||| ||||||||  ||| |||||||||| |||||||||||||| |||||   |||||||||||    
T  19264752 gactattttaaaatttcgatacattagaga-ctattgtgactactcgttacacattcaaggacgtaaatgactatt 19264826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 168
Target Start/End: Original strand, 21021124 - 21021178
Alignment:
Q  114 actattttaaaattttgatacatttaagaactattgtgacaactcgttacacatt 168  Q
    ||||||||||||||||||||| || || ||| |||||||| |||| |||||||||    
T  21021124 actattttaaaattttgatactttaaaaaacgattgtgaccactcattacacatt 21021178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 27100581 - 27100520
Alignment:
Q  127 tttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    ||||||||| | ||||| ||||||||| |||  ||||||||||| ||| |||||||||||||    
T  27100581 tttgatacaatgaagaattattgtgaccactgcttacacatttagggaataaaatgactatt 27100520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 188
Target Start/End: Original strand, 27100715 - 27100799
Alignment:
Q  104 ataattaaggactattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    ||||| |||||||||||| ||||||||||| | | | |||||||| |||| |||  ||||| ||||| |||  ||||||||||||    
T  27100715 ataataaaggactattttgaaattttgatatactgatgaactattatgactactgattacaaatttagggaccaaaatgactatt 27100799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 188
Target Start/End: Original strand, 37181349 - 37181419
Alignment:
Q  118 ttttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    |||||||||||||||| ||| || || |||| | || |||||||||||||||||||| |||||||||||||    
T  37181349 ttttaaaattttgatatattaaaaaaatattattactactcgttacacatttaaggactaaaatgactatt 37181419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 188
Target Start/End: Complemental strand, 16127129 - 16127051
Alignment:
Q  110 aaggactattttaaaattttgatacatttaaga-actattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    |||||||||||| |||||||||||| ||| ||| ||||||||||| |||| ||||||||||| |||  ||||||||||||    
T  16127129 aaggactattttgaaattttgatac-tttgagagactattgtgactactccttacacatttagggaccaaaatgactatt 16127051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 30118530 - 30118489
Alignment:
Q  113 gactattttaaaattttgatacatttaagaactattgtgaca 154  Q
    |||| |||||||||||||||||||| ||||||||||||||||    
T  30118530 gactgttttaaaattttgatacattgaagaactattgtgaca 30118489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 22391765 - 22391694
Alignment:
Q  117 attttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    ||||||||||||||||| ||| ||  |||||| |||| | ||||||||||||||||||| || |||| ||||    
T  22391765 attttaaaattttgatatattgaaagactattatgactattcgttacacatttaaggatcaatatgattatt 22391694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 153
Target Start/End: Original strand, 27554339 - 27554386
Alignment:
Q  106 aattaaggactattttaaaattttgatacatttaagaactattgtgac 153  Q
    ||||||||| ||||||| |||||||||||||| ||| |||||||||||    
T  27554339 aattaaggattattttagaattttgatacattgaaggactattgtgac 27554386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 168
Target Start/End: Original strand, 42420559 - 42420613
Alignment:
Q  114 actattttaaaattttgatacatttaagaactattgtgacaactcgttacacatt 168  Q
    |||||||||||||||||||||||||||  || |||||||| |  |||||||||||    
T  42420559 actattttaaaattttgatacatttaaagacaattgtgactatacgttacacatt 42420613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 168
Target Start/End: Complemental strand, 42932860 - 42932806
Alignment:
Q  114 actattttaaaattttgatacatttaagaactattgtgacaactcgttacacatt 168  Q
    ||||||||||||||| |||||||| || |||||||  ||| ||||||||||||||    
T  42932860 actattttaaaatttcgatacattaaaaaactatttcgactactcgttacacatt 42932806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 137
Target Start/End: Complemental strand, 6645747 - 6645714
Alignment:
Q  104 ataattaaggactattttaaaattttgatacatt 137  Q
    |||||||| |||||||||||||||||||||||||    
T  6645747 ataattaaagactattttaaaattttgatacatt 6645714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 188
Target Start/End: Original strand, 6217672 - 6217748
Alignment:
Q  112 ggactattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    |||||||||| ||||||||||||||| | | ||||||||| | | ||| |||||||| | |||  ||||||||||||    
T  6217672 ggactattttgaaattttgatacattgagggactattgtggctattcgctacacattcatggaccaaaatgactatt 6217748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 188
Target Start/End: Original strand, 8206322 - 8206398
Alignment:
Q  112 ggactattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    |||||||| |||||||| |||||||| ||| |||||  |||| |||  ||||||||| || ||| ||||||||||||    
T  8206322 ggactattataaaatttcgatacattaaaggactatcatgactacttattacacattcaatgatcaaaatgactatt 8206398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 188
Target Start/End: Complemental strand, 284399 - 284321
Alignment:
Q  110 aaggactattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    |||||||||| || ||||||||||||||||  ||||| |||||| |||| ||||||||| || ||| ||||||||||||    
T  284399 aaggactattgtagaattttgatacatttagaaactagtgtgactactctttacacattcaaagataaaaatgactatt 284321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 3941834 - 3941928
Alignment:
Q  106 aattaaggactattttaaaattttgatacatttaagaactattgt---gacaactcgttacacatttaaggattaaaatgactattctctctttt 197  Q
    |||||||||||||||||||||||||||||||| ||| |||| |||   ||| |||| ||| ||||| |||||  |||||||||||| ||| ||||    
T  3941834 aattaaggactattttaaaattttgatacattaaaggactactgtgacgaccactccttatacattcaaggaccaaaatgactattatctgtttt 3941928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 168
Target Start/End: Complemental strand, 5800240 - 5800176
Alignment:
Q  104 ataattaaggactattttaaaattttgatacatttaagaactattgtgacaactcgttacacatt 168  Q
    ||||||||||||||||||||||| |  ||| ||| ||||||||||||||| |||| |||||||||    
T  5800240 ataattaaggactattttaaaatatcaatatattgaagaactattgtgactactcattacacatt 5800176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 188
Target Start/End: Complemental strand, 26483112 - 26483038
Alignment:
Q  114 actattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    ||||||||| |||||||||||||| ||  ||||||||| | |||||||| |||| ||||||  ||||||||||||    
T  26483112 actattttagaattttgatacattaaatgactattgtgtctactcgttatacatctaaggaccaaaatgactatt 26483038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 46848397 - 46848455
Alignment:
Q  110 aaggactattttaaaattttgatacatttaagaactattgtgacaactcgttacacatt 168  Q
    |||||||||||| ||||||||||||||| | |||||||| |||| |||| |||||||||    
T  46848397 aaggactattttgaaattttgatacattgaggaactattttgactactcattacacatt 46848455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 47199783 - 47199723
Alignment:
Q  113 gactattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaagg 173  Q
    ||||||||| ||||||||||||||| ||||| |||||||||  ||| ||||||||| ||||    
T  47199783 gactattttgaaattttgatacattgaagaattattgtgacttctcattacacattcaagg 47199723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 47944579 - 47944650
Alignment:
Q  113 gactattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgac 184  Q
    ||||||||||||||||  ||||||| ||| || |||||||| | | |||||||||| ||| |||||||||||    
T  47944579 gactattttaaaatttcaatacattcaaggacaattgtgactattagttacacattcaagtattaaaatgac 47944650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 188
Target Start/End: Original strand, 20936561 - 20936627
Alignment:
Q  122 aaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    |||||||||||||||| ||| || |||||||| |||||||| ||| ||| |||  ||||||||||||    
T  20936561 aaaattttgatacattgaaggacaattgtgaccactcgttaaacaattatggaccaaaatgactatt 20936627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 188
Target Start/End: Complemental strand, 24255295 - 24255221
Alignment:
Q  114 actattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    ||||||| ||| |||||||||||| | |||||||| |||| ||||||| |||||| |  || |||||||||||||    
T  24255295 actatttaaaatttttgatacattgaggaactattatgaccactcgtttcacattcagagagtaaaatgactatt 24255221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 188
Target Start/End: Original strand, 29079310 - 29079376
Alignment:
Q  122 aaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    |||||||||||||||| ||| || |||||||| |||||||| ||| ||| |||  ||||||||||||    
T  29079310 aaaattttgatacattgaaggacaattgtgaccactcgttatacaattatggaccaaaatgactatt 29079376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 43837154 - 43837084
Alignment:
Q  118 ttttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    ||||||||||||| |||||||| | ||||||||||  | |||||||||||| |  || |||||||||||||    
T  43837154 ttttaaaattttggtacatttagggactattgtgattattcgttacacattcagtgactaaaatgactatt 43837084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 30669403 - 30669358
Alignment:
Q  143 actattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    ||||||||||| |||| ||||||||||| |||| ||||||||||||    
T  30669403 actattgtgactactccttacacatttagggatcaaaatgactatt 30669358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 34294177 - 34294210
Alignment:
Q  155 actcgttacacatttaaggattaaaatgactatt 188  Q
    ||||||||||||||||||||| ||||||||||||    
T  34294177 actcgttacacatttaaggatcaaaatgactatt 34294210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 36080823 - 36080892
Alignment:
Q  119 tttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    ||||||||||||||||||| || |||||||||||| |  | ||||||||| | | || ||||||||||||    
T  36080823 tttaaaattttgatacattaaaaaactattgtgactaaccattacacattgaggaatcaaaatgactatt 36080892  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 188
Target Start/End: Complemental strand, 37326657 - 37326593
Alignment:
Q  123 aaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    |||||| |||| ||| |||||||||||||   ||||||||||||||||| || |||||||||||||    
T  37326657 aaatttcgatagattgaagaactattgtggttactcgttacacatttaa-gactaaaatgactatt 37326593  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 153
Target Start/End: Complemental strand, 38989806 - 38989765
Alignment:
Q  112 ggactattttaaaattttgatacatttaagaactattgtgac 153  Q
    |||||||||||||||||||||||||| | | |||||||||||    
T  38989806 ggactattttaaaattttgatacattgatggactattgtgac 38989765  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 182
Target Start/End: Complemental strand, 28961963 - 28961895
Alignment:
Q  114 actattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatg 182  Q
    |||| |||| |||||  ||| ||| ||||||||||||| |||||||||||||||| || ||| ||||||    
T  28961963 actactttagaatttctatatattaaagaactattgtgtcaactcgttacacattcaaagatgaaaatg 28961895  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 45681408 - 45681456
Alignment:
Q  104 ataattaaggactattttaaaattttgatacatttaagaactattgtga 152  Q
    ||||| |||||||||||||||||||  ||||||||||  ||||||||||    
T  45681408 ataatcaaggactattttaaaatttcaatacatttaaagactattgtga 45681456  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 51889822 - 51889758
Alignment:
Q  124 aattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    |||||||||||||| ||  ||||||||||| |||| ||||||||| |  ||| ||||||||||||    
T  51889822 aattttgatacattgaaagactattgtgactactccttacacattcagagatcaaaatgactatt 51889758  T

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Target: scaffold0329 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 168
Target Start/End: Complemental strand, 6274 - 6217
Alignment:
Q  111 aggactattttaaaattttgatacatttaagaactattgtgacaactcgttacacatt 168  Q
    ||||||||||||||||||||||||||| | | ||||||| ||| ||||||| ||||||    
T  6274 aggactattttaaaattttgatacattgatggactattgggactactcgttgcacatt 6217  T

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Target: scaffold0329; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 188
Target Start/End: Original strand, 6470 - 6546
Alignment:
Q  112 ggactattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatgactatt 188  Q
    |||||||||| |||||||||| |||| ||| |||||| |||| | || ||||||||| | | | |||||||||||||    
T  6470 ggactattttgaaattttgattcattgaaggactattatgactattcattacacattcaggtactaaaatgactatt 6546  T

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Target: scaffold0053 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 14819 - 14747
Alignment:
Q  110 aaggactattttaaaattttgatacatttaagaactattgtgacaactcgttacacatttaaggattaaaatg 182  Q
    |||||||||||| ||||||||||||||| ||| | ||||||  | ||||||||||| || |||||| ||||||    
T  14819 aaggactattttcaaattttgatacattgaaggattattgttgctactcgttacactttcaaggatgaaaatg 14747  T

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