View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_27 (Length: 437)
Name: NF9839A_low_27
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 13 - 416
Target Start/End: Complemental strand, 30262477 - 30262074
Alignment:
| Q |
13 |
gatggacatcatatgaatggtgatggcaatgataagcctcttcaggtctatgtgagaaggaaaacaaagaaatggagtgaagatactgaaggatgctgtg |
112 |
Q |
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| T |
30262477 |
gatgcacataatatgaatggtgatggcaatgataagcctcttcaggtctatgtgagaaggaaaacaaagaaatggagtgaagatactgaaggatgccgtg |
30262378 |
T |
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| Q |
113 |
cttgctctccttccaaattgaaaaagggatctacgttactccatggaaacaagccagccatcatttctgacggcagtgaaccatccatgtcaaaaattgt |
212 |
Q |
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| T |
30262377 |
cttgctctccttccaaattgaaaaagggatctatgttactccatggaaacaagccagccatcatttctgatggcagtgaaccatccatgtcaaaagttgt |
30262278 |
T |
|
| Q |
213 |
tgtagaggagactgttttacatggtggtgtggctgaagccgaacccacgaacatcaatgtcgttgaagaggagactgatctgcatggtagtgttgctgat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30262277 |
tgtagaggagactgttttacatggtggtgtggctgaagccgaacccacgaacatcaatgtcgttgaagaggagactgatctgcatggtagtgttgctgat |
30262178 |
T |
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| Q |
313 |
gctgaacccacaaacatcaatgtggaagaaaatgatgatgaccttcctctttccttcttgcaaaacaagacaaggaggcgaaaaagacggcacactattc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30262177 |
gctgaacccacaaacatcaatgtggaagaaaatgatgatgaccttcctctttccttcttgcaaaacaagacaaggaggcgaaaaagacggcacactattc |
30262078 |
T |
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| Q |
413 |
agat |
416 |
Q |
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|||| |
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| T |
30262077 |
agat |
30262074 |
T |
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