View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9839A_low_270 (Length: 251)

Name: NF9839A_low_270
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9839A_low_270
NF9839A_low_270
[»] scaffold0521 (2 HSPs)
scaffold0521 (19-128)||(4912-5020)
scaffold0521 (152-232)||(4798-4878)
[»] chr8 (2 HSPs)
chr8 (19-128)||(18290767-18290875)
chr8 (152-232)||(18290669-18290749)
[»] chr7 (1 HSPs)
chr7 (53-128)||(35345325-35345399)
[»] chr6 (1 HSPs)
chr6 (53-128)||(2272386-2272460)
[»] chr5 (1 HSPs)
chr5 (53-128)||(39343873-39343947)
[»] chr1 (1 HSPs)
chr1 (53-128)||(4009717-4009791)
[»] chr3 (1 HSPs)
chr3 (53-111)||(18202154-18202211)


Alignment Details
Target: scaffold0521 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: scaffold0521
Description:

Target: scaffold0521; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 5020 - 4912
Alignment:
Q  19 atcaaacccacaaaactaaaccaaaagccaaagagaacttttaacgaacacttccctgtatcagccgccactttgtctcctccggcaacgaggatcttct 118  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||    
T  5020 atcaaaccgacaaaactaaaccaaaagccaaagagaacttttaacgaacactgcc-tatatcagccgccactttgtctcctccggcaacgaggatcttct 4922  T
Q  119 cataggttca 128  Q
    ||||||||||    
T  4921 cataggttca 4912  T

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Target: scaffold0521; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 4878 - 4798
Alignment:
Q  152 aatttcttttgtatcaagtccacgcatgctgactcctgccctaactcctgcttggttttggttttgcttcaggtgttgatg 232  Q
    |||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4878 aatttcttttgttttaagtccacacatgctgactcctgccctaactcctgcttggttttggttttgcttcaggtgtcgatg 4798  T

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Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 18290875 - 18290767
Alignment:
Q  19 atcaaacccacaaaactaaaccaaaagccaaagagaacttttaacgaacacttccctgtatcagccgccactttgtctcctccggcaacgaggatcttct 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||    
T  18290875 atcaaaccaacaaaactaaaccaaaagccaaagagaacttttaacgaacactt-cctgtatcagccgccactttatctcctccgacaacgaggatcttct 18290777  T
Q  119 cataggttca 128  Q
    ||||||||||    
T  18290776 cataggttca 18290767  T

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Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 18290749 - 18290669
Alignment:
Q  152 aatttcttttgtatcaagtccacgcatgctgactcctgccctaactcctgcttggttttggttttgcttcaggtgttgatg 232  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18290749 aatttcttttgtatcaagtccacacatgcagactcctgccctaactcctgcttggttttggttttgcttcaggtgtcgatg 18290669  T

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Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 35345325 - 35345399
Alignment:
Q  53 gaacttttaacgaacacttccctgtatcagccgccactttgtctcctccggcaacgaggatcttctcataggttca 128  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  35345325 gaacttttaacgaacacttcc-tgtatcagccgccactttgtctcctccggcaacgaggttcttctcataggttca 35345399  T

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Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 2272386 - 2272460
Alignment:
Q  53 gaacttttaacgaacacttccctgtatcagccgccactttgtctcctccggcaacgaggatcttctcataggttca 128  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2272386 gaacttttaacgaacacttcc-tgtatcagccgccactttgtctcctccggcaacgaggttcttctcataggttca 2272460  T

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Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 39343873 - 39343947
Alignment:
Q  53 gaacttttaacgaacacttccctgtatcagccgccactttgtctcctccggcaacgaggatcttctcataggttca 128  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39343873 gaacttttaacgaacacttcc-tgtatcagccgccactttgtctcctccggcaacgaggttcttctcataggttca 39343947  T

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Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 4009717 - 4009791
Alignment:
Q  53 gaacttttaacgaacacttccctgtatcagccgccactttgtctcctccggcaacgaggatcttctcataggttca 128  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4009717 gaacttttaacgaacacttcc-tgtatcagccgccactttgtctcctccggcaacgaggttcttctcataggttca 4009791  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 53 - 111
Target Start/End: Original strand, 18202154 - 18202211
Alignment:
Q  53 gaacttttaacgaacacttccctgtatcagccgccactttgtctcctccggcaacgagg 111  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18202154 gaacttttaacgaacacttcc-tgtatcagccgccactttgtctcctccggcaacgagg 18202211  T

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