View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_271 (Length: 251)
Name: NF9839A_low_271
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_271 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 38 - 251
Target Start/End: Original strand, 1482586 - 1482799
Alignment:
| Q |
38 |
accctaatgtccatgaggtgaattgaagaagatttgaagtgcagaaaaactattgaagatagttgaaggagatatcatagagcaaaaggaaaaggagatt |
137 |
Q |
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| T |
1482586 |
accctaatgtccatgaggtgaattgaaaaagatttgaagtgcagaaaaactattgaagatagttgaaggagatatcatagagcaaaaggaaaaggagatt |
1482685 |
T |
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| Q |
138 |
tgggctgagcttaatcatcttccgatgatttatagggttccaaaagcaaagaacttggtgatttttccaatctgcttaatcttctgcttgaagattaaag |
237 |
Q |
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| T |
1482686 |
tgggctgagcttaatcatcttctgatgatttatagggatccaaaagcaaagaacttggtgatttttccaatctgcttaatcttctgcttgaagattaaag |
1482785 |
T |
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| Q |
238 |
ctgtatacatttta |
251 |
Q |
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| T |
1482786 |
ctgtatacatttta |
1482799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 36717295 - 36717532
Alignment:
| Q |
19 |
acatcagaaaagggtttcgaccctaatgtccatgaggtgaattgaagaagatttgaagtgcagaaaaactattgaagatagttgaaggagatatcataga |
118 |
Q |
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| T |
36717295 |
acatcagaaaagggttaggaccttgatgtccatgaggtgaattgaagaagatttaaagtgcaggaaaaa-attaaagagaattgaaggagaaatcttaga |
36717393 |
T |
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| Q |
119 |
gcaaaaggaaaaggagatttgggctgagcttaatcatcttccgatgatttatagggttcca------aaagcaaagaacttggtgatttttccaatctgc |
212 |
Q |
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| T |
36717394 |
gcaaatgggaaaggagatttgggctgagcttaatcatcttctgatgatttatagggcttcaagaaggaaagcagagaacttggtgtttgatccagtttgt |
36717493 |
T |
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| Q |
213 |
ttaatcttctgcttgaagattaaagctgtatacatttta |
251 |
Q |
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| T |
36717494 |
gtaatcttctacttgaagattatagctgtatacatttta |
36717532 |
T |
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