View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_276 (Length: 251)
Name: NF9839A_low_276
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_276 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 48673920 - 48673670
Alignment:
| Q |
1 |
tgtttccaccgggagtcgaaattggattcttccaaatgattcatattaatggaagctctttaaccacttaaattcaatcatttagttgcaatgtataaat |
100 |
Q |
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| T |
48673920 |
tgttttcacctgaagtcgaaattggattcttccaaatgattcatattaatggaagctctttaaccacttaaattcaatcatttagttgcaatgtataaat |
48673821 |
T |
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| Q |
101 |
ctaatccctcacannnnnnn-gaaagaatttaatccctcacattattgatattctaaaaggatcctgaaattgcaacattttaatcaaacttgtccatgt |
199 |
Q |
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| T |
48673820 |
ctaatccctcacattttttttgaaagaatttaatccctcacattattgatattctaaaaggatcctgaaattgcaacattttaatcaaacttgtccatgt |
48673721 |
T |
|
| Q |
200 |
gttgttatatggaggataaatttgaaagtaagttaatattattggagatgc |
250 |
Q |
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| T |
48673720 |
gttgttatatggaggataaatttgaaagtaagttaataatattggtgatgc |
48673670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 4156067 - 4156013
Alignment:
| Q |
141 |
attattgatattctaaaaggatc-ctgaaattgcaacattttaatcaaacttgtc |
194 |
Q |
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| T |
4156067 |
attatggatattctaaaatgatctctgaaattgcaaaattttaatcaaatttgtc |
4156013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 40258868 - 40258808
Alignment:
| Q |
136 |
ctcacattattgatattctaaaaggatc-ctgaaattgcaacattttaatcaaacttgtcc |
195 |
Q |
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| T |
40258868 |
ctcacattatcgatattcaaaaatgatctctgaaattacaaaattttaatcaaatttgtcc |
40258808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 12241375 - 12241431
Alignment:
| Q |
133 |
tccctcacattattgatattctaaaaggatcct-gaaattgcaacattttaatcaaa |
188 |
Q |
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| T |
12241375 |
tccctcacattatcgatattttaaaatgattcttgaaattgcaaaattttaatcaaa |
12241431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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