View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_281 (Length: 251)
Name: NF9839A_low_281
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_281 |
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| [»] scaffold0477 (1 HSPs) |
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Alignment Details
Target: scaffold0477 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 241
Target Start/End: Complemental strand, 10068 - 9838
Alignment:
| Q |
10 |
attattctcgtcagacttaaacctaattaaaataagaataattttgatccgaggatttccccccattcatgtatagaccgtgggtgggtataggaaaatt |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
10068 |
attattctcgtcagacttaaacctaattaaaataagaataattttgatccgaggatttccccccattcatgtataga-cgtgggtgggtataggaaattt |
9970 |
T |
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| Q |
110 |
gttattccttgcccactttattccactannnnnnnnattacagaaaacagaaataaattaggaatagagaatccacatcaaagttggaataatgatatct |
209 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9969 |
gttattccttgcccactttattccacgattttttttattacagaaaacagaaataaattaggaatagagaatccacatcaaagttggaataatgatatct |
9870 |
T |
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| Q |
210 |
atttgcaaacattgaggtcagtaacattgatg |
241 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
9869 |
atttgcaaacattgaggtcagtaacattgatg |
9838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 241
Target Start/End: Complemental strand, 18181063 - 18180833
Alignment:
| Q |
10 |
attattctcgtcagacttaaacctaattaaaataagaataattttgatccgaggatttccccccattcatgtatagaccgtgggtgggtataggaaaatt |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
18181063 |
attattctcgtcagacttaaacctaattaaaataagaataattttgatccgaggatttccccccattcatgtataga-cgtgggtgggtataggaaattt |
18180965 |
T |
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| Q |
110 |
gttattccttgcccactttattccactannnnnnnnattacagaaaacagaaataaattaggaatagagaatccacatcaaagttggaataatgatatct |
209 |
Q |
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| T |
18180964 |
gttattccttgcccactttattccacgattttttttattacagaaaacagaaataaattaggaatagagaatccacatcaaagttggaataatgatatct |
18180865 |
T |
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| Q |
210 |
atttgcaaacattgaggtcagtaacattgatg |
241 |
Q |
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| T |
18180864 |
atttgcaaacattgaggtcagtaacattgatg |
18180833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 113 - 241
Target Start/End: Complemental strand, 37189616 - 37189488
Alignment:
| Q |
113 |
attccttgcccactttattccactannnnnnnnattacagaaaacagaaataaattaggaatagagaatccacatcaaagttggaataatgatatctatt |
212 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37189616 |
attccttgcccactttattccactattttttttattacagaaaacagaaataaattaggaatagagaattcacatcaaagttggaataatgatatctatt |
37189517 |
T |
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| Q |
213 |
tgcaaacattgaggtcagtaacattgatg |
241 |
Q |
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| T |
37189516 |
tgcaaacattgaggtcagtaacattgatg |
37189488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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