View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_284 (Length: 250)
Name: NF9839A_low_284
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_284 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 8928127 - 8927885
Alignment:
| Q |
8 |
ggctggtcaaatcagaattaaaagtgtatggagaatggtctcttgacagtgcagctataggtctggcatggttggatgatcaggtaataaatcatcatct |
107 |
Q |
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| T |
8928127 |
ggctggtcaaatcagaattaaaagtatatggagaatggtctcttgacagtgcagctataggtctggcatggttggatgatcaggtaataaatcatcatct |
8928028 |
T |
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| Q |
108 |
gcctacttagattagttagacatgtggctacttttattcttcactgtttcattcccatttactcttgtatctccnnnnnnnnnnnnnnnaaagagagtct |
207 |
Q |
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| T |
8928027 |
gcctacttagattagttagacatgtggctacttttattcttcactgtttcattcccatttactcttgtatctccttttttttattttttaaagagagtct |
8927928 |
T |
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| Q |
208 |
ctttgcttgttatattacgagtatttaagctgatattctactt |
250 |
Q |
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| T |
8927927 |
ctttgcttgttataataagagtatttaagatgatattctactt |
8927885 |
T |
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