View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_287 (Length: 250)
Name: NF9839A_low_287
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_287 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 27 - 243
Target Start/End: Complemental strand, 41392076 - 41391856
Alignment:
| Q |
27 |
gtaagcattctcatttaactcatgcacgcatctctccaacctatcatttgttgttttccaatgttt----ggatagttgagtagaattcattcagccact |
122 |
Q |
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| T |
41392076 |
gtaagcattctcatttaactcatgcaaccatatctccaacctatcatttgttgttttccaatgtttaattggatagttgagtagaattaattcagccact |
41391977 |
T |
|
| Q |
123 |
tttccattgttggataacatgcatgaaaaggaattcttccaagatagagcaatccttacacctaaaatagtttgtattaatcctttcactatgtttattt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
41391976 |
tttccattgttggataacatgcatgaaaaggaattcttttaagatagagcaatccttacacctaaaacagtttgtattaatcctttcactctgtttattt |
41391877 |
T |
|
| Q |
223 |
atctattctgtttcatatcag |
243 |
Q |
| |
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|||| |||| |||||| |||| |
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| T |
41391876 |
atctgttctatttcatttcag |
41391856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 43027191 - 43027129
Alignment:
| Q |
127 |
cattgttggataacatgcatgaaaaggaattcttccaagatagagcaatccttacacctaaaa |
189 |
Q |
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| T |
43027191 |
cattgttggataacatgcatgaaaaggaattcttccaagatagagcaatacttacacctaaaa |
43027129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 925154 - 925216
Alignment:
| Q |
127 |
cattgttggataacatgcatgaaaaggaattcttccaagatagagcaatccttacacctaaaa |
189 |
Q |
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| T |
925154 |
cattgttggataacatgcatgaaaaggatttcttccaagatagagcaatacttacacctaaaa |
925216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 44703696 - 44703636
Alignment:
| Q |
129 |
ttgttggataacatgcatgaaaaggaattcttccaagatagagcaatccttacacctaaaa |
189 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
44703696 |
ttgttggataacatgcatgaaaatgaattcttccaagatagagcaatacttacacctaaaa |
44703636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 189
Target Start/End: Original strand, 5453645 - 5453705
Alignment:
| Q |
129 |
ttgttggataacatgcatgaaaaggaattcttccaagatagagcaatccttacacctaaaa |
189 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
5453645 |
ttgttggataacatgcatgaaaacgaattcttccaagatagagcaatacttacacctaaaa |
5453705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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