View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_289 (Length: 250)
Name: NF9839A_low_289
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_289 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 29418535 - 29418766
Alignment:
| Q |
20 |
catcatttataaaacattagaaagacgtgaaatttgatgattcacataatcaaagctagaagcgaaattctactaaaaataatacagaaataggnnnnnn |
119 |
Q |
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| T |
29418535 |
catcatttataaaacattagaaagacatgaaatttgatgattcacataatcaaagctagaagcaaaattctactaaaaataatacagaaataggaaaaaa |
29418634 |
T |
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| Q |
120 |
n-gagaaggtataaagatccataaaaagttacaatttactgcatcaaaattatgaaaaatgttcacgatactgcaccaaagaattgttgcttcccaccag |
218 |
Q |
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| T |
29418635 |
aagagaaggtataaagatccataaaaagttacaatttactgcatcaaaattatgaaaaatgttcacgatactgcaccaaagaattgctgcttcccaccag |
29418734 |
T |
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| Q |
219 |
aacgggattctgtctgtgtcggagctataata |
250 |
Q |
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| T |
29418735 |
aacgggattctgtctgtgtcggagctataata |
29418766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 24411868 - 24412091
Alignment:
| Q |
20 |
catcatttataaaacattagaaagacgtgaaatttgatgattcacataatcaaagctagaagcgaaattctactaaaaataatacagaaataggnnnnnn |
119 |
Q |
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| T |
24411868 |
catcatttatataacattagaaataggtaaaatttgatgattcgcataatcaaagctagaagtgaaattttattaaaacttatagagaaatagggaaa-- |
24411965 |
T |
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| Q |
120 |
ngagaaggtataaagatccataaaaagttacaatttactgcatcaaaattatgaaaaatgttcacgatactgcaccaaagaattgttgcttcccaccaga |
219 |
Q |
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| T |
24411966 |
--aaaaggtataaagatccaaaacaagttacaatttacttcatcaaaatcatgaaaaatgtttacgatactacacaaaaaagttgtcgcttcccaccaga |
24412063 |
T |
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| Q |
220 |
acgggattctgtctgtgtcggagctata |
247 |
Q |
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| T |
24412064 |
gcggtgttctgtctgtttcgaagctata |
24412091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 124 - 247
Target Start/End: Original strand, 24337389 - 24337512
Alignment:
| Q |
124 |
aaggtataaagatccataaaaagttacaatttactgcatcaaaattatgaaaaatgttcacgatactgcaccaaagaattgttgcttcccaccagaacgg |
223 |
Q |
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|||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||| |||| | |||||||| ||| | |
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| T |
24337389 |
aaggtataaagatccaaaacaagttacaatttactgcatcaaaatcatgaaaaatgttcacgatactacacaaaagagttgtcacctcccaccataacag |
24337488 |
T |
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| Q |
224 |
gattctgtctgtgtcggagctata |
247 |
Q |
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| T |
24337489 |
tgttctgtccgtgtcggagctata |
24337512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 24337257 - 24337345
Alignment:
| Q |
20 |
catcatttataaaacattagaaagacgtgaaatttgatgattcacataatcaaagctagaagcgaaattctactaaaaataatacagaa |
108 |
Q |
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| T |
24337257 |
catcatttataaaacattagaaagagttaaaatttgatgattcacataatcaaagctagaagtaaaattttactaaaaataatacagaa |
24337345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 45649235 - 45649295
Alignment:
| Q |
21 |
atcatttataaaacattagaaagacgtgaaatttgatgattcacataatcaaagctagaag |
81 |
Q |
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||||||||||||| ||| |||||| | |||||||||||| ||||||||||||||||||| |
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| T |
45649235 |
atcatttataaaagattcgaaagagatacaatttgatgattaacataatcaaagctagaag |
45649295 |
T |
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