View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9839A_low_29 (Length: 434)
Name: NF9839A_low_29
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_29 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 13 - 423
Target Start/End: Original strand, 13229801 - 13230210
Alignment:
| Q |
13 |
gatggacatcatcaatgaagctataccttttctcaattggtatattgtatggtttctgcacctcaaaatttgcttcagtcaatggcacagaggtaaaacc |
112 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13229801 |
gatgaacaccatcaatgaagctataccttttctcaattggtatattgtatggtttctgcacctcaaaatttgcttcagtcaatggcacagaggtaaaacc |
13229900 |
T |
|
| Q |
113 |
atcagtaggatcatcaccatgtacaagcactgtattttctttagacacaagaatgaacaaagatagaatcacaaaaatgtaagagctatacatttttcct |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
13229901 |
atcagtaggatcatcaccatgtacaagcactgtattttctatagacacaagaatgaacaaagatagaatcacaaaaatgtaagagctatacatttttact |
13230000 |
T |
|
| Q |
213 |
tcaatttctccttcttgatcccttcagtagaatgttatgagtttttgtagagaagtataagggcatatatatagccacatcacacataagagtctaagag |
312 |
Q |
| |
|
|||||||||||| |||||| |||||| |||||| || ||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13230001 |
tcaatttctcctacttgattccttcaatagaatattgtgagtcctt-tagagaagtataaggtcatatatatagccacatcacacataagagtctaagag |
13230099 |
T |
|
| Q |
313 |
ttttaaaannnnnnnnattagggttttgtattggattaattgttcttataaaaatgacttgtaagacgagaggtgccattgctactctatctaaacaaaa |
412 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13230100 |
ttttaaaatatattttattagggttttgtattggattaattgttcttataaaaatgacttgtaagacaagaggtgccattgctactctatctaaacaaaa |
13230199 |
T |
|
| Q |
413 |
tttgggtctta |
423 |
Q |
| |
|
||||||||||| |
|
|
| T |
13230200 |
tttgggtctta |
13230210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University