View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_291 (Length: 250)
Name: NF9839A_low_291
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_291 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 247
Target Start/End: Complemental strand, 34956415 - 34956184
Alignment:
| Q |
16 |
ggacatcatgagcatgagtcttattatggagatcgtgatacagatagccttgttaaggtacacattatatttaatttaaattagcatgatttgtatcatt |
115 |
Q |
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| T |
34956415 |
ggacatcatgagcatgagtcttattatggagatcgtgatacagatagccttgttaaggtacacattatatttaatttaaattagcatgatttgtatcatt |
34956316 |
T |
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| Q |
116 |
ttactttgaagtgtttatgcttttaagtataattgaacatcactgtttaccattagagtacaacatgcctgatatgaagtgtctctgctgcagacaatgg |
215 |
Q |
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| T |
34956315 |
ttactttgaagtgtttatgcttttaagtataattgaacatcactgtttaccattagagtacaacatgcctgatatgaagtgtctctgctgcagacaatgg |
34956216 |
T |
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| Q |
216 |
agaatatattggcgtctttcccttcagagtat |
247 |
Q |
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| T |
34956215 |
agaatatattggcgtctttcccttcagagtat |
34956184 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 31391018 - 31391094
Alignment:
| Q |
14 |
atggacatcatgagcatgagtcttattatggagatcgtgatacagatagccttgttaaggtacacattatatttaattt |
92 |
Q |
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| T |
31391018 |
atggacatcatgaacatgagtcctattatggagaccgtgatacagaaagcctagtcaaggttcaca--atatttaattt |
31391094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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