View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_292 (Length: 250)
Name: NF9839A_low_292
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_292 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 53219714 - 53219950
Alignment:
| Q |
1 |
atactaactttcttgccacaatttctcgatcctttgcctctgatcgattgaaccagatacatcctacactctccaaaatggtgccttgcaacaatcctgc |
100 |
Q |
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| T |
53219714 |
atactaactttcttgccacaatttctcgatcctttgcctctgatcgattgaaccagatacatcctacactctccaaaatggtgctttgcaacaatcctgc |
53219813 |
T |
|
| Q |
101 |
atagtatttaaacttttaataaaattcataaa-taactttagtcaagacaaattatgacaacaattcaacattacgaagctattctttaaatcatccatg |
199 |
Q |
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|||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
53219814 |
atagtatttaaacttttaataaaattcataaattaagttcagtcaagacaaattatgacaacaaatcaacattacgaagctattctttaaatcatccatg |
53219913 |
T |
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| Q |
200 |
attgttcatcataaaccctactcttccggatgtccat |
236 |
Q |
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||||||||||||||||||||||||||| ||||||||| |
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| T |
53219914 |
attgttcatcataaaccctactcttcctgatgtccat |
53219950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 15411811 - 15412043
Alignment:
| Q |
1 |
atactaactttcttgccacaatttctcgatcctttgcctctgatcgattgaaccagatacatcctacactctccaaaatggtgccttgcaacaatcctgc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||| |
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| T |
15411811 |
atactaactttcttgccacaatttctcgatcctttgcttctgatcgattgaaccaaatgcatcctacactctccaaaatggtgctttgcaacaatcctgt |
15411910 |
T |
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| Q |
101 |
atagtatttaaacttttaataaaattcataaataactttagtcaagacaaattatgacaacaattcaacattacgaagctattctttaaatcatccatga |
200 |
Q |
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| |||| ||| |||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
15411911 |
acagtagttatacttttaataaaattcataaat---tttagtcaagacaagttatgaaaacaattcaacattacgaagctattctttaaatcatccatga |
15412007 |
T |
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| Q |
201 |
ttgttcatcataaaccctactcttccggatgtccat |
236 |
Q |
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|||||||| ||||||||||||||||| ||||||||| |
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| T |
15412008 |
ttgttcattataaaccctactcttcctgatgtccat |
15412043 |
T |
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