View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_30 (Length: 434)
Name: NF9839A_low_30
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_30 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 16 - 434
Target Start/End: Original strand, 41037732 - 41038150
Alignment:
| Q |
16 |
ggacatcaactaactgatggattgatcttctttattgcaccacaagacagtgtgattccacccaactcagaaaatcaatattttggattagttgattcaa |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||| |||||||||||| |
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| T |
41037732 |
ggacatcaactaactgatggattgatcttctttattgcaccacaagacactgtgattccacccaattcagaaagtcaatattttggagtagttgattcaa |
41037831 |
T |
|
| Q |
116 |
agaatgcttacaatcaatttgttggtgtagagtttgacctttatcccaatagttttgatccctatatttaccatattggaatcgatgtcaactctataat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41037832 |
agaatgcttacaatcaatttgttggtgtagagtttgacctttatcccaatagttttgatccctatatttaccatattggaatcgatgtcaactctataat |
41037931 |
T |
|
| Q |
216 |
ttcgaccaagatcgtggaatgggattgggaatgggtgagtgaatcattgaatcaagtaagtatagcctacgactctccctctaacacattgagtgttgtt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
41037932 |
ttcgaccaagatcgtggaatgggattgggaatgggtgagtgaatcattgaatcaagtaagtatagcctatgactctccctctaacacattgagtgttgtt |
41038031 |
T |
|
| Q |
316 |
gtcatacatgccaatggcaaaattgttaccattgctgacatagttgatttgaaaactgtgctccccaacacggttaggtttggtctatctgctgcttcaa |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41038032 |
gtcatacatgccaatggcaaaattgttaccattgctgacatagttgatttgaaaactgtgctccccaacacggttaggtttggtctatctgctgcttcag |
41038131 |
T |
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| Q |
416 |
taactggtataccacatga |
434 |
Q |
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||||||||||| ||||||| |
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| T |
41038132 |
taactggtatagcacatga |
41038150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 27 - 423
Target Start/End: Original strand, 41065933 - 41066323
Alignment:
| Q |
27 |
aactgatggattgatcttctttattgcaccacaagacagtgtgattccacccaactcagaaaatcaatattttggattagttgattcaaagaatgcttac |
126 |
Q |
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||||||||| ||| |||||||||||||||||||||||| | |||||||||||||||||||| ||||||| ||||| ||||||||||||| ||| ||||| |
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| T |
41065933 |
aactgatggtttggtcttctttattgcaccacaagacactaagattccacccaactcagaaagtcaatatcttggagtagttgattcaaaaaatacttac |
41066032 |
T |
|
| Q |
127 |
aatcaatttgttggtgtagagtttgacctttatcccaatagttttgatccctatatttaccatattggaatcgatgtcaactctataatttcgaccaaga |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||| ||||||| ||||| |
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| T |
41066033 |
aatcaatttgttggtgtagagtttgacctttatcccaatagttttgatcccaatacgaaacatattggaatcgatgtcaactctttaatttctctcaaga |
41066132 |
T |
|
| Q |
227 |
tcgtggaatgggattgggaatgggtgagtgaatcattgaatcaagtaagtatagcctacgactctccctctaacacattgagtgttgttgtcatacatgc |
326 |
Q |
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|||| || ||||||| | ||||| |||||||| | ||||||||| ||| || |||||| ||||||||||||||||||||||||||| |||| |
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| T |
41066133 |
ccgtgaaa------tgggaattcgcgagtggatcattgactaaagtaagtaaagcatatgactcttcctctaacacattgagtgttgttgtcacttatgc |
41066226 |
T |
|
| Q |
327 |
caatggcaaaattgttaccattgctgacatagttgatttgaaaactgtgctccccaacacggttaggtttggtctatctgctgcttcaataactggt |
423 |
Q |
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|||||| ||| || |||||||||| | || |||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
41066227 |
caatggaaaattttctaccattgctcaaatcgttgatttgaaagctgtgctccccaacaaggttaggtttggtctatctggtgcttcaataactggt |
41066323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 27 - 421
Target Start/End: Original strand, 41043785 - 41044173
Alignment:
| Q |
27 |
aactgatggattgatcttctttattgcaccacaagacagtgtgattccacccaactcagaaaatcaatattttggattagttgattcaaagaatgcttac |
126 |
Q |
| |
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|||||||||| ||||||| ||||||||||||||||||| ||||||||||||| ||||| || | | ||||||| |||||||| | | ||||||||| |
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| T |
41043785 |
aactgatggagtgatcttttttattgcaccacaagacactgtgattccaccccactcaacaagtgcacgttttggagtagttgatatagaaaatgcttac |
41043884 |
T |
|
| Q |
127 |
aatcaatttgttggtgtagagtttgacctttatcccaatagttttgatccctatatttaccatattggaatcgatgtcaactctataatttcgaccaaga |
226 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||| | |||||||| |||| | ||||||||||||||| |||||||| ||||||||| ||||| |
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| T |
41043885 |
aatcaatttgttggtgtagagtttgacctttataccaatattcttgatcccaatatgaaacatattggaatcgatatcaactctttaatttcgagcaaga |
41043984 |
T |
|
| Q |
227 |
tcgtggaatgggattgggaatgggtgagtgaatcattgaatcaagtaagtatagcctacgactctccctctaacacattgagtgttgttgtcatacatgc |
326 |
Q |
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|||||||||||| |||||||||||| |||||||| |||||||||| ||||||| |||| ||||||||| |||||||||||| |||||| ||| |
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| T |
41043985 |
tcgtggaatggg------aatgggtgagtggatcattgactcaagtaagtgtagcctatgactttccctctaagacattgagtgttcttgtcacttatga |
41044078 |
T |
|
| Q |
327 |
caatggcaaaattgttaccattgctgacatagttgatttgaaaactgtgctccccaacacggttaggtttggtctatctgctgcttcaataactg |
421 |
Q |
| |
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|||| ||||||||| |||| ||||| | ||| ||||||||||||| ||||||||||||||| ||||| |||||||| ||| |||||||||||||| |
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| T |
41044079 |
caatcgcaaaattgctacccttgctcaaataattgatttgaaaaccgtgctccccaacacgattaggcttggtctagctggtgcttcaataactg |
41044173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 41074111 - 41074145
Alignment:
| Q |
118 |
aatgcttacaatcaatttgttggtgtagagtttga |
152 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
41074111 |
aatgcttacaatcaatttgttggtgtagagtttga |
41074145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 41047360 - 41047304
Alignment:
| Q |
110 |
attcaaagaatgcttacaatcaatttgttggtgtagagtttgacctttatcccaata |
166 |
Q |
| |
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||||||| ||||||| ||| ||||||||||||||||||||||| |||| |||||| |
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| T |
41047360 |
attcaaataatgcttttaataaatttgttggtgtagagtttgacacttatgccaata |
41047304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 182; Significance: 3e-98; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 31 - 423
Target Start/End: Complemental strand, 8496198 - 8495812
Alignment:
| Q |
31 |
gatggattgatcttctttattgcaccacaagacagtgtgattccacccaactcagaaaatcaatattttggattagttgattcaaagaatgcttacaatc |
130 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| || | || ||||| ||||||||||||| | | ||||||||| |
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|
| T |
8496198 |
gatggattggtcttctttattgcaccacaagacactgtgattccacccaactcagaaagtctacatcttggagtagttgattcaaaaagttcttacaatc |
8496099 |
T |
|
| Q |
131 |
aatttgttggtgtagagtttgacctttatcccaatagttttgatccctatatttaccatattggaatcgatgtcaactctataatttcgaccaagatcgt |
230 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||| ||||| ||| |
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| T |
8496098 |
aatttgttggtgtagagtttgacctttatcccaatagttttgatcccaatacgagacatattggaatcgatgtcaactctttaatttctctcaagaccgt |
8495999 |
T |
|
| Q |
231 |
ggaatgggattgggaatgggtgagtgaatcattgaatcaagtaagtatagcctacgactctccctctaacacattgagtgttgttgtcatacatgccaat |
330 |
Q |
| |
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| ||||| ||| | ||||| |||||||| | ||||||| ||||| || |||||| |||| |||||||||||||||||||||| |||||||| |
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| T |
8495998 |
------gaattggcaatttgcgagtggatcattgactaaagtaagcatagcttatgactcttcctcaaacacattgagtgttgttgtcacttatgccaat |
8495905 |
T |
|
| Q |
331 |
ggcaaaattgttaccattgctgacatagttgatttgaaaactgtgctccccaacacggttaggtttggtctatctgctgcttcaataactggt |
423 |
Q |
| |
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|| ||| || ||||||||| | ||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
8495904 |
ggaaaattttccaccattgctcaaatagttgatttgaaaacagtgctccccaacaaggttaggtttggtctatctggtgcttcaataactggt |
8495812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 355 - 423
Target Start/End: Complemental strand, 8488368 - 8488300
Alignment:
| Q |
355 |
atagttgatttgaaaactgtgctccccaacacggttaggtttggtctatctgctgcttcaataactggt |
423 |
Q |
| |
|
||||||||||||||||| |||||||| |||| |||||||||||||||||||| |||||||||||||||| |
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| T |
8488368 |
atagttgatttgaaaacagtgctccctaacaaggttaggtttggtctatctggtgcttcaataactggt |
8488300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 316
Target Start/End: Original strand, 21489359 - 21489406
Alignment:
| Q |
269 |
aagtaagtatagcctacgactctccctctaacacattgagtgttgttg |
316 |
Q |
| |
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||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
21489359 |
aagtaagtataatctatgactctccctctaacacattgagtgttgttg |
21489406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 153
Target Start/End: Original strand, 21482869 - 21482904
Alignment:
| Q |
118 |
aatgcttacaatcaatttgttggtgtagagtttgac |
153 |
Q |
| |
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||||||| |||||||||||||||||||||||||||| |
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| T |
21482869 |
aatgctttcaatcaatttgttggtgtagagtttgac |
21482904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 153
Target Start/End: Original strand, 21493021 - 21493056
Alignment:
| Q |
118 |
aatgcttacaatcaatttgttggtgtagagtttgac |
153 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
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| T |
21493021 |
aatgctttcaatcaatttgttggtgtagagtttgac |
21493056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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