View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_300 (Length: 249)
Name: NF9839A_low_300
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_300 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 9 - 234
Target Start/End: Original strand, 39182327 - 39182551
Alignment:
| Q |
9 |
gatcagtagtaatattcaacttcgccggctgcaagaaaagaaaagaaaatataggatgcattaaaacttgtgtatccattgcaaccaaacacaagtgaaa |
108 |
Q |
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| T |
39182327 |
gatcagtagtaatattcaacttcgccggctgcaaaaaaaaaaaaaaaaatataggatgcattaaaacttgtgtatccattgcaaccaaacacaagtgaaa |
39182426 |
T |
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| Q |
109 |
gatgtttgtttaaagcagctttggctgtaagtcattgctatttcatctactagaaaatcaaagaattgaaacctataagaactcaaaagtcttgtggagt |
208 |
Q |
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| T |
39182427 |
gatgtttgtttaaagcagctttggctgtaagtc-ttgctatttcatctactagaaaatcaaagaattgaaacctataagaactcaaaagtcttgtgaagt |
39182525 |
T |
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| Q |
209 |
ctaacctccaagatttttgccgcgat |
234 |
Q |
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| T |
39182526 |
ctaacctccaagatttttgccgcgat |
39182551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 81 - 234
Target Start/End: Complemental strand, 2103243 - 2103088
Alignment:
| Q |
81 |
tatccattgcaaccaaacacaagtgaaagatgtttgtttaaagcagctttggctgtaagtcattgctatttcatctactagaaaatcaaagaattgaaac |
180 |
Q |
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| T |
2103243 |
tatccattgcaaccaaacacaagtgaaagatgtttttttaaagcaactttggctgtaagtcattgctatttcatctactaggaaatcaaagaattgaaac |
2103144 |
T |
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| Q |
181 |
ctataagaactc--aaaagtcttgtggagtctaacctccaagatttttgccgcgat |
234 |
Q |
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| T |
2103143 |
caataagaactcagaaaagtcttgtgaagtctaacctccaagatttttgccacgat |
2103088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 81
Target Start/End: Complemental strand, 2103370 - 2103302
Alignment:
| Q |
10 |
atcagtagtaatattcaacttcgccggctgcaagaaaagaaaagaaaatataggatgcattaaaacttgtgt |
81 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||| |
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| T |
2103370 |
atcagtagtaatattcaacttcgccggctgca--aaaagaaaa-aaaatatagaatgcattaaaacttgtgt |
2103302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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