View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9839A_low_301 (Length: 249)

Name: NF9839A_low_301
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9839A_low_301
NF9839A_low_301
[»] chr1 (2 HSPs)
chr1 (83-249)||(28524250-28524413)
chr1 (17-56)||(28524182-28524221)


Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 83 - 249
Target Start/End: Original strand, 28524250 - 28524413
Alignment:
Q  83 gtgtctgacaccggtacaccttccaagttccgtcagaaatgtcggtgctacacatatatcaaatgtctagtagaaatggtggaaatacaaggttaatctt 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28524250 gtgtctgacaccggtacaccttccaagttccgtcagaaatgtcggtgctacacatatatcaaatgtctagtagaaatggtggaaatacatggttaatctt 28524349  T
Q  183 aacaaaatcacacgtactattttattattttaaggaataaaattaactattgaaacatgggaaataa 249  Q
    |||||||||||||||||||||   |||||||||||||||||| ||||||||||||||||||||||||    
T  28524350 aacaaaatcacacgtactatt---ttattttaaggaataaaagtaactattgaaacatgggaaataa 28524413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 28524182 - 28524221
Alignment:
Q  17 gacatcaacacgacgacactgatacaaccataagaatttg 56  Q
    ||||||||||||||| ||||||||||||| ||||||||||    
T  28524182 gacatcaacacgacggcactgatacaaccgtaagaatttg 28524221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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