View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_302 (Length: 249)
Name: NF9839A_low_302
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_302 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 4911869 - 4912102
Alignment:
| Q |
4 |
acatcagatgcaacacaactccaatagaaggactccatatcaattgcggtctgatgttgcgttgtcgatgctggtggaaaaatggaggtatgattgcagg |
103 |
Q |
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| T |
4911869 |
acataagatgcaacacaactccaatagaaggactccatatcaattgcggtctgatgttgcgttgtcgatgctggtggaaaaatggaggtatgattgcagg |
4911968 |
T |
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| Q |
104 |
ttatattgataacagatccacaaagatctgaattacctctatagttgttctcatcaaagtttgcaaactgcattgtggttggaactctaccagagaattt |
203 |
Q |
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| T |
4911969 |
ttatattgataacagatccacaaagatctgaattacctctatagttgttctcatcaaagtttgcaaactgcattgtggttggaactctaccagagaattt |
4912068 |
T |
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| Q |
204 |
gttatatgagacattgaatatagctaaagagtat |
237 |
Q |
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| T |
4912069 |
gttatatgagacattgaatatagctaaagagtat |
4912102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 32744877 - 32745110
Alignment:
| Q |
4 |
acatcagatgcaacacaactccaatagaaggactccatatcaattgcggtctgatgttgcgttgtcgatgctggtggaaaaatggaggtatgattgcagg |
103 |
Q |
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| T |
32744877 |
acataagatgcagcacaactccaatagaaggactcgatatcaattgcagtctgatgttgcgttgtcgatgctggtggaaatatggaggtatgattgcaga |
32744976 |
T |
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| Q |
104 |
ttatattgataacagatccacaaagatctgaattacctctatagttgttctcatcaaagtttgcaaactgcattgtggttggaactctaccagagaattt |
203 |
Q |
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| T |
32744977 |
ttatattgataacagatccacaaagatctgaattacctctatagttgttctcatcaaagtttgcaaactgcattgtggttggaattgtaccagaaaattt |
32745076 |
T |
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| Q |
204 |
gttatatgagacattgaatatagctaaagagtat |
237 |
Q |
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| T |
32745077 |
gttgtatgagacattgaatatggctaaagagtat |
32745110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 3 - 237
Target Start/End: Original strand, 2125309 - 2125540
Alignment:
| Q |
3 |
gacatcagatgcaacacaactccaatagaaggactccatatcaattgcggtctgatgttgcgttgtcgatgctggtggaaaaatggaggtatgattgcag |
102 |
Q |
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||||| ||||||| || ||| ||||||||||||||||||||| ||||| ||||||| |||| ||||| || || ||||||| ||| ||||||| |
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| T |
2125309 |
gacataagatgcagcaaaaccccaatagaaggactccatatccattgcagtctgattttgcattgtctccaatgttgagaaaatgg---tatcattgcag |
2125405 |
T |
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| Q |
103 |
gttatattgataacagatccacaaagatctgaattacctctatagttgttctcatcaaagtttgcaaactgcattgtggttggaactctaccagagaatt |
202 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| | | ||||| |||| |
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| T |
2125406 |
cttatattgagaacagatccacaaagatctgaattacctctatagttattctcatcaaaatttgcaaactgcattgtggttggaattttcccagacaatt |
2125505 |
T |
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| Q |
203 |
tgttatatgagacattgaatatagctaaagagtat |
237 |
Q |
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|||| ||||||||||||||||| |||||||||||| |
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| T |
2125506 |
tgttgtatgagacattgaatatggctaaagagtat |
2125540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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