View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_31 (Length: 432)
Name: NF9839A_low_31
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_31 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 17 - 432
Target Start/End: Complemental strand, 33127831 - 33127413
Alignment:
| Q |
17 |
gacatcaacaccgttgtacgcatgcccctcctcatgattgcatattcttcggtggccttccattgccgcctatggctctagtcgttcttacatgtttcct |
116 |
Q |
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| T |
33127831 |
gacatcaacaccgttgtacgcatgcccctcctcatgattgcatattcttcggtggccttccattgccgcctatggctctagtcgttcttacatgtttcct |
33127732 |
T |
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| Q |
117 |
actcctttggctcttcatcgtttggatccaagcgaacatgttgtcccttaaccctat---ataaaagggcaattctatgactggttttttgtacttcacg |
213 |
Q |
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| T |
33127731 |
actcctttggctcttcatcgtttggatccaagcgaacatgttgtcccttaaccctattatataaaagggcaattttatgactgattttttgtacttcacg |
33127632 |
T |
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| Q |
214 |
atctggaagattcacttctaggttgttgttgttgatctatttattgcaattcgctactactggtttgtgttttcgttgtgctactgctagcattgggttg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33127631 |
atctggaagattcacttctaggttgttgttgttgatctatttattgcaattcgctactactggtttgtgttttcgttgtgctactgctagcattgggttg |
33127532 |
T |
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| Q |
314 |
ttgttggttcgagttcatcgtgaggtcgcacaccttttttgttatttagttttgcactcgtattacgagttcaatggattgtgctaatgcgttttagttg |
413 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
33127531 |
ttgttggttcgagttcatcgtgaggtcacacaccttttttgttatttggttttgcactcgtattacgagttcgatggattgtgctaatgtgttttagttg |
33127432 |
T |
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| Q |
414 |
cttcgtgtaccaactttga |
432 |
Q |
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||||||||||||||||||| |
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| T |
33127431 |
cttcgtgtaccaactttga |
33127413 |
T |
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