View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9839A_low_311 (Length: 248)

Name: NF9839A_low_311
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9839A_low_311
NF9839A_low_311
[»] chr4 (4 HSPs)
chr4 (6-247)||(42756779-42757024)
chr4 (48-234)||(11560140-11560325)
chr4 (111-199)||(35648583-35648671)
chr4 (134-246)||(24180637-24180749)
[»] scaffold1315 (1 HSPs)
scaffold1315 (6-247)||(1152-1381)
[»] scaffold1293 (1 HSPs)
scaffold1293 (6-247)||(690-919)
[»] chr2 (3 HSPs)
chr2 (9-247)||(6466802-6467039)
chr2 (111-235)||(5788068-5788192)
chr2 (134-246)||(45661111-45661223)
[»] scaffold0169 (1 HSPs)
scaffold0169 (87-219)||(5082-5214)
[»] chr8 (10 HSPs)
chr8 (134-244)||(45528202-45528312)
chr8 (92-168)||(5685854-5685930)
chr8 (123-233)||(18431535-18431645)
chr8 (111-246)||(38291757-38291892)
chr8 (92-173)||(45247753-45247834)
chr8 (110-165)||(38291216-38291271)
chr8 (119-173)||(14715279-14715333)
chr8 (102-162)||(23686596-23686656)
chr8 (103-143)||(32916816-32916856)
chr8 (134-246)||(43215513-43215625)
[»] chr1 (4 HSPs)
chr1 (109-199)||(31089549-31089639)
chr1 (109-173)||(27342183-27342247)
chr1 (204-247)||(11976911-11976954)
chr1 (9-62)||(22635700-22635753)
[»] scaffold0159 (1 HSPs)
scaffold0159 (111-235)||(32441-32565)
[»] chr5 (1 HSPs)
chr5 (87-165)||(15301534-15301611)
[»] chr3 (6 HSPs)
chr3 (125-219)||(12125486-12125580)
chr3 (111-199)||(20934247-20934335)
chr3 (115-173)||(25225359-25225417)
chr3 (134-247)||(9266725-9266838)
chr3 (91-150)||(10973269-10973326)
chr3 (102-162)||(39187289-39187349)
[»] chr7 (2 HSPs)
chr7 (87-200)||(42078967-42079082)
chr7 (91-152)||(15464396-15464457)
[»] scaffold0377 (1 HSPs)
scaffold0377 (111-200)||(12561-12652)
[»] chr6 (2 HSPs)
chr6 (125-173)||(4852808-4852856)
chr6 (125-173)||(11554422-11554470)
[»] scaffold0051 (1 HSPs)
scaffold0051 (103-150)||(17307-17354)
[»] scaffold0061 (1 HSPs)
scaffold0061 (182-244)||(45616-45678)
[»] scaffold0017 (1 HSPs)
scaffold0017 (182-244)||(153109-153171)
[»] scaffold0012 (1 HSPs)
scaffold0012 (119-173)||(95954-96008)
[»] scaffold1804 (1 HSPs)
scaffold1804 (210-247)||(1034-1071)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 6 - 247
Target Start/End: Complemental strand, 42757024 - 42756779
Alignment:
Q  6 agaaacaaagacaccc----ctctatgaaatagccaccaactcacattttttaccatgttgttcctcttatattatttttccttctcaccatatcatgga 101  Q
    ||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||| ||    
T  42757024 agaaacaaagacacccacctctctatgaaatagccaccaactcacattttttaccatgttgttcctcttatcttatttttctatctcaccatatcataga 42756925  T
Q  102 cgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcacgactataaattcagcaacatataagtt 201  Q
    | | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||    
T  42756924 cacggagaatctcacacttaagggagagatgttaatgtgtcatttgtgagtaaaacttctacattggatgcaagactatatattgagcaacatataagtt 42756825  T
Q  202 aaatgacaaatatacctagagtcttaaggttttggatgaagatgtg 247  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  42756824 aaatgacaaatatacctaaagtcttaaggttttggatgaagatgtg 42756779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 234
Target Start/End: Original strand, 11560140 - 11560325
Alignment:
Q  48 ttttttaccatgttgttcctcttatattatttttccttctcaccatatcatggacgcagagaatctcacacttaagggagagatggtaatgtgtcatttg 147  Q
    |||||||||||||||| ||||| |  |||||||||  |||||||| ||||   |   | ||| || ||||||||||||||||||| |||||||||||  |    
T  11560140 ttttttaccatgttgtgcctctgactttatttttctatctcaccaaatcacaaatataaagagtcccacacttaagggagagatgttaatgtgtcatggg 11560239  T
Q  148 tgagtaaaacttctacattggatgcacgactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggtttt 234  Q
    ||||| |||||| ||||||||||||| || |||| ||| | ||| ||||| || | ||||||||||||| |   |||||||||||||    
T  11560240 tgagttaaacttatacattggatgcaagagtatatattga-caatatatacgtgagatgacaaatatacttgatgtcttaaggtttt 11560325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 199
Target Start/End: Complemental strand, 35648671 - 35648583
Alignment:
Q  111 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcacgactataaattcagcaacatataag 199  Q
    |||||||| ||||||||||||| | |||| |||| ||||||| |||||||||||||| | |||  | |||| ||| |||||||||||||    
T  35648671 tctcacacgtaagggagagatgtttatgtttcatgtgtgagttaaacttctacattgtaagcaatagtatatattgagcaacatataag 35648583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 246
Target Start/End: Complemental strand, 24180749 - 24180637
Alignment:
Q  134 taatgtgtcatttgtgagtaaaacttctacattggatgcacgactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttt 233  Q
    ||||||| ||| ||||||| || ||| |||||| |||||| || || | ||| |||||||||||| | ||||| | ||||||||||   |||||||||||    
T  24180749 taatgtgacatgtgtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataactgaaatgtccaatatacctaatatcttaaggttt 24180650  T
Q  234 tggatgaagatgt 246  Q
    || ||||| ||||    
T  24180649 tgaatgaaaatgt 24180637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1315 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 6 - 247
Target Start/End: Original strand, 1152 - 1381
Alignment:
Q  6 agaaacaaagacacccctctatgaaatagccaccaactcacattttttaccatgttgttcctcttatattatttttccttctcaccatatcatggacgca 105  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||  ||| |||||||||| ||| ||    
T  1152 agaaacaaagacacccttctacgaaatagccaccaactcacattttttatcatgttgttcctcttatcttatttttctatcttaccatatcatagacaca 1251  T
Q  106 gagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcacgactataaattcagcaacatataagttaaat 205  Q
     | |||||||||||||| |||||            ||||||||||||||||||||||||||||||||| ||||||| |||  ||||||||||||||||||    
T  1252 taaaatctcacacttaacggaga------------tcatttgtgagtaaaacttctacattggatgcaagactatatattgtgcaacatataagttaaat 1339  T
Q  206 gacaaatatacctagagtcttaaggttttggatgaagatgtg 247  Q
    |||||||||| ||| |||||||||||||||||||||||||||    
T  1340 gacaaatatatctaaagtcttaaggttttggatgaagatgtg 1381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 6 - 247
Target Start/End: Complemental strand, 919 - 690
Alignment:
Q  6 agaaacaaagacacccctctatgaaatagccaccaactcacattttttaccatgttgttcctcttatattatttttccttctcaccatatcatggacgca 105  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||  ||| |||||||||| ||| ||    
T  919 agaaacaaagacacccttctacgaaatagccaccaactcacattttttatcatgttgttcctcttatcttatttttctatcttaccatatcatagacaca 820  T
Q  106 gagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcacgactataaattcagcaacatataagttaaat 205  Q
     | |||||||||||||| |||||            ||||||||||||||||||||||||||||||||| ||||||| |||  ||||||||||||||||||    
T  819 taaaatctcacacttaacggaga------------tcatttgtgagtaaaacttctacattggatgcaagactatatattgtgcaacatataagttaaat 732  T
Q  206 gacaaatatacctagagtcttaaggttttggatgaagatgtg 247  Q
    |||||||||| ||| |||||||||||||||||||||||||||    
T  731 gacaaatatatctaaagtcttaaggttttggatgaagatgtg 690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 6466802 - 6467039
Alignment:
Q  9 aacaaagacacccctctatgaaatagccaccaactcacattttttaccatgttgttcctcttatattatttttccttctcaccatatcatggacgcagag 108  Q
    |||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||||| |||||||||| ||||| |||||||| |||  ||||    
T  6466802 aacaaagacacccctctatgtaatagtcaccaactcacattttt-accattttgttcctcttatcttatttttccatctcaacatatcatagacatagag 6466900  T
Q  109 aatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcacgactataaattcagcaacatataagttaaatgac 208  Q
    |||||| | |||||||| |||||| ||||||||||||| ||||||||||||||||||||||| || || |||| ||| ||||| |||||| | |||||||    
T  6466901 aatctcgcccttaagggtgagatgataatgtgtcatttatgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgac 6467000  T
Q  209 aaatatacctagagtcttaaggttttggatgaagatgtg 247  Q
    ||||||| |||  |||||||| ||||||||| |||||||    
T  6467001 aaatataactaatgtcttaagtttttggatggagatgtg 6467039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 235
Target Start/End: Complemental strand, 5788192 - 5788068
Alignment:
Q  111 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcacgactataaattcagcaacatataagttaaatgacaa 210  Q
    |||| ||||| ||||| ||| | ||||||||||  ||||| | |||||||||||||  ||| | || |||| ||| |||||||||||||| | |||||||    
T  5788192 tctcgcacttgagggaaagacgttaatgtgtcacgtgtgatttaaacttctacattatatgtaagagtatatattgagcaacatataagtgagatgacaa 5788093  T
Q  211 atatacctagagtcttaaggttttg 235  Q
    ||||||  | |||||||||||||||    
T  5788092 atatactcaaagtcttaaggttttg 5788068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 246
Target Start/End: Original strand, 45661111 - 45661223
Alignment:
Q  134 taatgtgtcatttgtgagtaaaacttctacattggatgcacgactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttt 233  Q
    ||||||| ||| ||||||| || ||| |||||| |||||| || || | ||| |||||||||||||| | ||| | ||||||| ||  |||||||| |||    
T  45661111 taatgtgacatgtgtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataagtgagatgtccaatatacttaatgtcttaagattt 45661210  T
Q  234 tggatgaagatgt 246  Q
    || ||||| ||||    
T  45661211 tgaatgaaaatgt 45661223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 87 - 219
Target Start/End: Original strand, 5082 - 5214
Alignment:
Q  87 tcaccatatcatggacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcacgactataaattc 186  Q
    |||||||||| | ||  |||||| ||||||| ||||| ||||||||  ||||||||||  |||||| |||| ||||||||||||||| || |||| |||     
T  5082 tcaccatatcttagatacagagagtctcacaattaagcgagagatgagaatgtgtcatgcgtgagttaaacatctacattggatgcaagaatatacattg 5181  T
Q  187 agcaacatataagttaaatgacaaatataccta 219  Q
    | |||||||||||| || |||| ||||||||||    
T  5182 aacaacatataagtgaagtgaccaatataccta 5214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 244
Target Start/End: Original strand, 45528202 - 45528312
Alignment:
Q  134 taatgtgtcatttgtgagtaaaacttctacattggatgcacgactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttt 233  Q
    |||||| |||| | ||||| ||| ||| || |||||||||||| |||| ||| |||||||||||| | | ||||||||||||||||  |||||||| |||    
T  45528202 taatgtatcatgtatgagttaaatttcaacgttggatgcacgagtatatattgagcaacatataaatgagatgacaaatatacctaatgtcttaagattt 45528301  T
Q  234 tggatgaagat 244  Q
    ||| |||||||    
T  45528302 tgggtgaagat 45528312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 168
Target Start/End: Original strand, 5685854 - 5685930
Alignment:
Q  92 atatcatggacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattgg 168  Q
    ||||||| |||  |||||||||||||||||| ||||||||| ||||||||||| ||||||| | | |||||||||||    
T  5685854 atatcatagacatagagaatctcacacttaaaggagagatgttaatgtgtcatgtgtgagttataattctacattgg 5685930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 233
Target Start/End: Complemental strand, 18431645 - 18431535
Alignment:
Q  123 gggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcacgactataaattcagcaacatataagttaaatgacaaatatacctagag 222  Q
    |||||||||| ||||||||||| ||||||| |||||||||  || |||||| || |||| ||| |||||||||||  | | ||||| ||||||||||  |    
T  18431645 gggagagatgttaatgtgtcatgtgtgagttaaacttctaattttgatgcaagagtatatattgagcaacatatatttgagatgaccaatatacctaatg 18431546  T
Q  223 tcttaaggttt 233  Q
    |||| ||||||    
T  18431545 tcttcaggttt 18431535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 246
Target Start/End: Original strand, 38291757 - 38291892
Alignment:
Q  111 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcacgactataaattcagcaacatataagttaaatgacaa 210  Q
    |||||||||||||||||| ||  | ||||| || ||| || | ||| ||| ||||| |||||| || |  | ||| || ||||||||||| |||| |  |    
T  38291757 tctcacacttaagggagatatattgatgtggcaattgcgacttaaagttccacatttgatgcaagagtggacattgagaaacatataagtgaaattatca 38291856  T
Q  211 atatacctagagtcttaaggttttggatgaagatgt 246  Q
    |||||||||  |||||||||||||||||||||||||    
T  38291857 atatacctaatgtcttaaggttttggatgaagatgt 38291892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 173
Target Start/End: Original strand, 45247753 - 45247834
Alignment:
Q  92 atatcatggacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgca 173  Q
    ||||||| | |||||||| |||||||||||||||||||||  |||| |||||  ||||||| ||| |||||| ||| |||||    
T  45247753 atatcatagccgcagagagtctcacacttaagggagagattttaatatgtcaagtgtgagttaaagttctacgttgaatgca 45247834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 165
Target Start/End: Original strand, 38291216 - 38291271
Alignment:
Q  110 atctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacat 165  Q
    ||||||||||||||||||||||| |||||||  || ||||| | ||||||||||||    
T  38291216 atctcacacttaagggagagatgttaatgtgctatgtgtgatttaaacttctacat 38291271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 14715279 - 14715333
Alignment:
Q  119 ttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgca 173  Q
    ||||| |||||||| |||||| |||| ||||||| ||||||||||||| ||||||    
T  14715279 ttaagagagagatgttaatgtttcatgtgtgagttaaacttctacatttgatgca 14715333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 23686596 - 23686656
Alignment:
Q  102 cgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttcta 162  Q
    |||||||| | |||||||||||||||||||| |||| |||||  ||||||| ||| |||||    
T  23686596 cgcagagagtatcacacttaagggagagatgttaatatgtcaagtgtgagttaaagttcta 23686656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 32916816 - 32916856
Alignment:
Q  103 gcagagaatctcacacttaagggagagatggtaatgtgtca 143  Q
    ||||||| ||||||| |||||||||||||| ||||||||||    
T  32916816 gcagagagtctcacatttaagggagagatgctaatgtgtca 32916856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 246
Target Start/End: Complemental strand, 43215625 - 43215513
Alignment:
Q  134 taatgtgtcatttgtgagtaaaacttctacattggatgcacgactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttt 233  Q
    ||||||| ||| ||||||| || ||| |||||| |||||| || || | ||| |||||||||||||| | ||| | ||||||| ||  |||||| |||||    
T  43215625 taatgtgacatgtgtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataagtgagatgtccaatatacttaatgtcttacggttt 43215526  T
Q  234 tggatgaagatgt 246  Q
    || ||||| ||||    
T  43215525 tgaatgaaaatgt 43215513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 199
Target Start/End: Complemental strand, 31089639 - 31089549
Alignment:
Q  109 aatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcacgactataaattcagcaacatataag 199  Q
    |||||||||||||||||||| ||| ||||||||||| ||| ||| ||| |||||||||||||| | || ||||  || |||||||||||||    
T  31089639 aatctcacacttaagggagatatgttaatgtgtcatatgtaagttaaatttctacattggatgaaagagtatattttgagcaacatataag 31089549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 27342183 - 27342247
Alignment:
Q  109 aatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgca 173  Q
    ||||||||| |||||||||||||  | ||||  ||| ||||||| ||||||||||||||||||||    
T  27342183 aatctcacatttaagggagagatatttatgttccatgtgtgagttaaacttctacattggatgca 27342247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 11976911 - 11976954
Alignment:
Q  204 atgacaaatatacctagagtcttaaggttttggatgaagatgtg 247  Q
    |||||| |||||| ||| ||||||||||||||||||||||||||    
T  11976911 atgacacatatacatagtgtcttaaggttttggatgaagatgtg 11976954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 22635753 - 22635700
Alignment:
Q  9 aacaaagacacccctctatgaaatagccaccaactcacattttttaccatgttg 62  Q
    ||||||||||||| | ||| |||  ||||| |||||||||||||||||||||||    
T  22635753 aacaaagacacccttgtataaaaccgccacaaactcacattttttaccatgttg 22635700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 235
Target Start/End: Complemental strand, 32565 - 32441
Alignment:
Q  111 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcacgactataaattcagcaacatataagttaaatgacaa 210  Q
    |||| ||||| ||||| ||| | ||||||||||  ||||| | |||||||||||||  ||| | || |||| ||| |||||||||||||| | |||||||    
T  32565 tctcgcacttgagggaaagacgttaatgtgtcacgtgtgatttaaacttctacattatatgtaagagtatatattgagcaacatataagtgagatgacaa 32466  T
Q  211 atatacctagagtcttaaggttttg 235  Q
    ||||||  | |||||||||||||||    
T  32465 atatactcaaagtcttaaggttttg 32441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 165
Target Start/End: Original strand, 15301534 - 15301611
Alignment:
Q  87 tcaccatatcatggacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacat 165  Q
    |||||||||||| ||  || ||||||||| |||||||||||||||| ||| ||||||| ||||||| ||||||||||||    
T  15301534 tcaccatatcatagatacaaagaatctca-acttaagggagagatgttaacgtgtcatatgtgagttaaacttctacat 15301611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 12125580 - 12125486
Alignment:
Q  125 gagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcacgactataaattcagcaacatataagttaaatgacaaatataccta 219  Q
    |||||||| |||||||||||| |||||| | |||||||| || |||||| || |||| ||| ||||||||||| || | ||||| ||||||||||    
T  12125580 gagagatgttaatgtgtcattagtgagttacacttctacttttgatgcaagagtatatattgagcaacatatatgtgagatgaccaatataccta 12125486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 199
Target Start/End: Complemental strand, 20934335 - 20934247
Alignment:
Q  111 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcacgactataaattcagcaacatataag 199  Q
    |||||||| ||||||||||||| | |||| |||| ||||| | |||||||||||||| |||||  | |||| ||| |||||||||||||    
T  20934335 tctcacacataagggagagatgtttatgtttcatgtgtgacttaaacttctacattgtatgcaataatatatattgagcaacatataag 20934247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 173
Target Start/End: Complemental strand, 25225417 - 25225359
Alignment:
Q  115 acacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgca 173  Q
    ||||||||||||| |||| |||| |||||||||||||| ||| ||| |||||| |||||    
T  25225417 acacttaagggagggatgttaatatgtcatttgtgagttaaagttccacattgaatgca 25225359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 247
Target Start/End: Original strand, 9266725 - 9266838
Alignment:
Q  134 taatgtgtcatttgtgagtaaaacttctacattggatgcacgactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttt 233  Q
    ||||||| ||| ||||||| || ||| |||||| |||| | || || | ||| |||||| ||||||| | ||| | ||||||||||  ||||||||||||    
T  9266725 taatgtgacatgtgtgagttaaccttttacatttgatgtaagagtaaatattgagcaacgtataagtaagatgtccaatatacctaatgtcttaaggttt 9266824  T
Q  234 tggatgaagatgtg 247  Q
    || ||||| |||||    
T  9266825 tgaatgaaaatgtg 9266838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 150
Target Start/End: Complemental strand, 10973326 - 10973269
Alignment:
Q  91 catatcatggacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtga 150  Q
    |||||||| |||  ||||| |||||||||||||  ||||||| |||||||||||||||||    
T  10973326 catatcatagacatagagagtctcacacttaag--agagatgttaatgtgtcatttgtga 10973269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 39187289 - 39187349
Alignment:
Q  102 cgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttcta 162  Q
    |||||||| |||||||||||||||||||||  |||| |||||  ||||||| ||| |||||    
T  39187289 cgcagagagtctcacacttaagggagagattttaatatgtcaagtgtgagttaaagttcta 39187349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 200
Target Start/End: Complemental strand, 42079082 - 42078967
Alignment:
Q  87 tcaccatatcatggacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttc--tacattggatgcacgactataaat 184  Q
    |||||||||||| ||  || | ||||||||| |||||| ||||||| ||||||||||| ||||||| |||||||  |||||| |||||| || || | ||    
T  42079082 tcaccatatcatagattcaaacaatctcacagttaaggaagagatgttaatgtgtcatgtgtgagttaaacttctatacatttgatgcaagagtagatat 42078983  T
Q  185 tcagcaacatataagt 200  Q
    | |||||||| |||||    
T  42078982 tgagcaacatgtaagt 42078967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 15464457 - 15464396
Alignment:
Q  91 catatcatggacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagt 152  Q
    |||||||| |||  ||||| |||||||||||||| ||||||| ||||||||||| |||||||    
T  15464457 catatcatagacatagagagtctcacacttaaggtagagatgctaatgtgtcatgtgtgagt 15464396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0377 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 200
Target Start/End: Complemental strand, 12652 - 12561
Alignment:
Q  111 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttc--tacattggatgcacgactataaattcagcaacatataagt 200  Q
    |||||||||||||| ||||||| ||||||||||| ||||||| ||| |||  |||||| |||||| || || | ||| |||||||| |||||    
T  12652 tctcacacttaaggaagagatgttaatgtgtcatgtgtgagttaaatttctatacattagatgcaagagtaaatattgagcaacatgtaagt 12561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 4852808 - 4852856
Alignment:
Q  125 gagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgca 173  Q
    |||||||| ||||||||||| ||||||| || |||||||||||||||||    
T  4852808 gagagatgttaatgtgtcatgtgtgagttaaccttctacattggatgca 4852856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 11554470 - 11554422
Alignment:
Q  125 gagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgca 173  Q
    |||||||| ||||||||||| ||||||| || |||||||||||||||||    
T  11554470 gagagatgttaatgtgtcatgtgtgagttaaccttctacattggatgca 11554422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 150
Target Start/End: Original strand, 17307 - 17354
Alignment:
Q  103 gcagagaatctcacacttaagggagagatggtaatgtgtcatttgtga 150  Q
    ||||||||||||||||||||| | |||||| ||||||||||| |||||    
T  17307 gcagagaatctcacacttaagagtgagatgttaatgtgtcatatgtga 17354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 45678 - 45616
Alignment:
Q  182 aattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagat 244  Q
    |||| |||||||||||| | | ||||||||||||||||  |||||||| |||||| |||||||    
T  45678 aattaagcaacatataaatgagatgacaaatatacctaatgtcttaagattttgggtgaagat 45616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 153109 - 153171
Alignment:
Q  182 aattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagat 244  Q
    |||| |||||||||||| | | ||||||||||||||||  |||||||| |||||| |||||||    
T  153109 aattaagcaacatataaatgagatgacaaatatacctaatgtcttaagattttgggtgaagat 153171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 96008 - 95954
Alignment:
Q  119 ttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgca 173  Q
    ||||| |||||||| |||||| |||| ||||||| ||||||||||||| ||||||    
T  96008 ttaagagagagatgttaatgtttcatgtgtgagttaaacttctacatttgatgca 95954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1804 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1804
Description:

Target: scaffold1804; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 210 - 247
Target Start/End: Original strand, 1034 - 1071
Alignment:
Q  210 aatatacctagagtcttaaggttttggatgaagatgtg 247  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  1034 aatatacctattgtcttaaggttttggatgaagatgtg 1071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University