View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9839A_low_314 (Length: 248)

Name: NF9839A_low_314
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9839A_low_314
NF9839A_low_314
[»] chr2 (15 HSPs)
chr2 (32-232)||(30020283-30020482)
chr2 (32-232)||(30121390-30121589)
chr2 (49-232)||(30103161-30103344)
chr2 (32-232)||(30040213-30040412)
chr2 (32-232)||(30109691-30109890)
chr2 (32-232)||(30234351-30234550)
chr2 (32-213)||(30078701-30078881)
chr2 (32-213)||(30136414-30136594)
chr2 (157-228)||(30187278-30187349)
chr2 (157-227)||(30168612-30168682)
chr2 (190-232)||(30787720-30787762)
chr2 (156-228)||(30009127-30009199)
chr2 (190-227)||(30249370-30249407)
chr2 (163-232)||(30276943-30277012)
chr2 (156-228)||(30065624-30065696)


Alignment Details
Target: chr2 (Bit Score: 161; Significance: 6e-86; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 32 - 232
Target Start/End: Original strand, 30020283 - 30020482
Alignment:
Q  32 tggtaaaataattctaggtaaattagaatctaacactctatttcaattgaaaaaattctataaactcaaattggtagctagcaaaggggtgaccatggat 131  Q
    ||||||||||||||| | |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30020283 tggtaaaataattctcg-taaattagaatctaactctctatttcaatagaaaaaattctataaactcaaattggtagctagcaaaggggtgaccatggat 30020381  T
Q  132 gttctcatgggagtaattaataacattgctactaaaactgctgaatttacggttaaagctattggtcgtcaatttggttacatactctattacaagggca 231  Q
    ||| |||||||||| ||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30020382 gttgtcatgggagttattaataactttgctactaaaagtgctgaatttactgttaaagctattggtcgtcaatttggttacatactctattacaagggca 30020481  T

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Target: chr2; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 32 - 232
Target Start/End: Complemental strand, 30121589 - 30121390
Alignment:
Q  32 tggtaaaataattctaggtaaattagaatctaacactctatttcaattgaaaaaattctataaactcaaattggtagctagcaaaggggtgaccatggat 131  Q
    |||| |||||||||| | |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30121589 tggttaaataattctcg-taaattagaatctaactctctatttcaatagaaaaaattctataaactcaaattggtagctagcaaaggggtgaccatggat 30121491  T
Q  132 gttctcatgggagtaattaataacattgctactaaaactgctgaatttacggttaaagctattggtcgtcaatttggttacatactctattacaagggca 231  Q
    ||| |||||||||| ||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30121490 gttgtcatgggagttattaataactttgctactaaaagtgctgaatttactgttaaagctattggtcgtcaatttggttacatactctattacaagggca 30121391  T

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Target: chr2; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 49 - 232
Target Start/End: Complemental strand, 30103344 - 30103161
Alignment:
Q  49 gtaaattagaatctaacactctatttcaattgaaaaaattctataaactcaaattggtagctagcaaaggggtgaccatggatgttctcatgggagtaat 148  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  30103344 gtaaattagaatctaactctctatttcaatagaaaaaattctataaactcaaattggtagctagcaaaggggtgaccatggatgttgtcatgggagttat 30103245  T
Q  149 taataacattgctactaaaactgctgaatttacggttaaagctattggtcgtcaatttggttacatactctattacaagggcaa 232  Q
    ||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30103244 taataactttgctactaaaagtgctgaatttactgttaaagctattggtcgtcaatttggttacatactctattacaagggcaa 30103161  T

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Target: chr2; HSP #4
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 32 - 232
Target Start/End: Complemental strand, 30040412 - 30040213
Alignment:
Q  32 tggtaaaataattctaggtaaattagaatctaacactctatttcaattgaaaaaattctataaactcaaattggtagctagcaaaggggtgaccatggat 131  Q
    ||||||||||||||| | |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30040412 tggtaaaataattctcg-taaattagaatctaactctctatttcaatagaaaaaattctataaactcaaattggtggctagcaaaggggtgaccatggat 30040314  T
Q  132 gttctcatgggagtaattaataacattgctactaaaactgctgaatttacggttaaagctattggtcgtcaatttggttacatactctattacaagggca 231  Q
    ||| |||||||||| |||| |||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  30040313 gttatcatgggagttattactaactttgctactaaaactgccgaatttacggttgaagctattggtcgtcaatttggttacatactttattacaagggca 30040214  T

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Target: chr2; HSP #5
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 32 - 232
Target Start/End: Complemental strand, 30109890 - 30109691
Alignment:
Q  32 tggtaaaataattctaggtaaattagaatctaacactctatttcaattgaaaaaattctataaactcaaattggtagctagcaaaggggtgaccatggat 131  Q
    ||||||||||||||| | |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30109890 tggtaaaataattctcg-taaattagaatctaactctctatttcaatagaaaaaattctataaactcaaattggtggctagcaaaggggtgaccatggat 30109792  T
Q  132 gttctcatgggagtaattaataacattgctactaaaactgctgaatttacggttaaagctattggtcgtcaatttggttacatactctattacaagggca 231  Q
    ||| |||||||||| |||| |||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  30109791 gttatcatgggagttattactaactttgctactaaaactgccgaatttacggttgaagctattggtcgtcaatttggttacatactttattacaagggca 30109692  T

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Target: chr2; HSP #6
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 32 - 232
Target Start/End: Complemental strand, 30234550 - 30234351
Alignment:
Q  32 tggtaaaataattctaggtaaattagaatctaacactctatttcaattgaaaaaattctataaactcaaattggtagctagcaaaggggtgaccatggat 131  Q
    |||||||||| |||| | |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30234550 tggtaaaatatttctcg-taaattagaatctaactctctatttcaatagaaaaaattctataaactcaaattggtggctagcaaaggggtgaccatggat 30234452  T
Q  132 gttctcatgggagtaattaataacattgctactaaaactgctgaatttacggttaaagctattggtcgtcaatttggttacatactctattacaagggca 231  Q
    ||| |||||||||| |||| |||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  30234451 gttatcatgggagttattactaactttgctactaaaactgccgaatttacggttgaagctattggtcgtcaatttggttacatactttattacaagggca 30234352  T

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Target: chr2; HSP #7
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 32 - 213
Target Start/End: Original strand, 30078701 - 30078881
Alignment:
Q  32 tggtaaaataattctaggtaaattagaatctaacactctatttcaattgaaaaaattctataaactcaaattggtagctagcaaaggggtgaccatggat 131  Q
    |||||||||| |||| | |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30078701 tggtaaaatatttctcg-taaattagaatctaactctctatttcaatagaaaaaattctataaactcaaattggtagctagcaaaggggtgaccatggat 30078799  T
Q  132 gttctcatgggagtaattaataacattgctactaaaactgctgaatttacggttaaagctattggtcgtcaatttggttaca 213  Q
    ||| |||||||||| |||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  30078800 gttgtcatgggagttattattaactttgctactaagactgctgaatttacggttaaagctattggtcgtcaatttgattaca 30078881  T

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Target: chr2; HSP #8
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 32 - 213
Target Start/End: Complemental strand, 30136594 - 30136414
Alignment:
Q  32 tggtaaaataattctaggtaaattagaatctaacactctatttcaattgaaaaaattctataaactcaaattggtagctagcaaaggggtgaccatggat 131  Q
    |||||||||| |||| | |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30136594 tggtaaaatatttctcg-taaattagaatctaactctctatttcaatagaaaaaattctataaactcaaattggtagctagcaaaggggtgaccatggat 30136496  T
Q  132 gttctcatgggagtaattaataacattgctactaaaactgctgaatttacggttaaagctattggtcgtcaatttggttaca 213  Q
    ||| |||||||||| |||| |||| ||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||    
T  30136495 gttgtcatgggagttattattaactttgctactaaaactgctgaatttacggttgaagctattcgtcgtcaatttgattaca 30136414  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 30187349 - 30187278
Alignment:
Q  157 ttgctactaaaactgctgaatttacggttaaagctattggtcgtcaatttggttacatactctattacaagg 228  Q
    ||||| |||||| |||||| | || ||||  | ||||||||||||||||||||||||||||||| |||||||    
T  30187349 ttgctgctaaaattgctgagtatatggttgtacctattggtcgtcaatttggttacatactctactacaagg 30187278  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 30168612 - 30168682
Alignment:
Q  157 ttgctactaaaactgctgaatttacggttaaagctattggtcgtcaatttggttacatactctattacaag 227  Q
    ||||| |||||| |||||| | || ||||  | ||||||||||||||||||||||||||||||| ||||||    
T  30168612 ttgctgctaaaattgctgagtatatggttgtacctattggtcgtcaatttggttacatactctactacaag 30168682  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 30787720 - 30787762
Alignment:
Q  190 ctattggtcgtcaatttggttacatactctattacaagggcaa 232  Q
    ||||||| ||||||||||||||||||||||| |||||||||||    
T  30787720 ctattggacgtcaatttggttacatactctactacaagggcaa 30787762  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 30009127 - 30009199
Alignment:
Q  156 attgctactaaaactgctgaatttacggttaaagctattggtcgtcaatttggttacatactctattacaagg 228  Q
    |||||| |||||| ||||||| ||| ||||  | ||||||| ||||||||| ||||||||||||| |||||||    
T  30009127 attgctgctaaaattgctgaaattatggttgcacctattggacgtcaatttcgttacatactctactacaagg 30009199  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 30249370 - 30249407
Alignment:
Q  190 ctattggtcgtcaatttggttacatactctattacaag 227  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  30249370 ctattggacgtcaatttggttacatactctactacaag 30249407  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 30276943 - 30277012
Alignment:
Q  163 ctaaaactgctgaatttacggttaaagctattggtcgtcaatttggttacatactctattacaagggcaa 232  Q
    |||||| | ||||||||||||||  | ||||||| |  ||||||||||||||| | ||||||||||||||    
T  30276943 ctaaaatttctgaatttacggttgcacctattggacaacaatttggttacataatatattacaagggcaa 30277012  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 30065624 - 30065696
Alignment:
Q  156 attgctactaaaactgctgaatttacggttaaagctattggtcgtcaatttggttacatactctattacaagg 228  Q
    |||||| |||||  ||||||| ||| ||||  | ||||||| ||||||||| ||||||||||||| |||||||    
T  30065624 attgctgctaaatttgctgaaattatggttgcacctattggacgtcaatttcgttacatactctactacaagg 30065696  T

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