View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9839A_low_319 (Length: 247)

Name: NF9839A_low_319
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9839A_low_319
NF9839A_low_319
[»] chr4 (12 HSPs)
chr4 (17-237)||(4025194-4025414)
chr4 (25-237)||(4009972-4010184)
chr4 (25-237)||(4002275-4002487)
chr4 (25-237)||(3801562-3801774)
chr4 (25-237)||(3954360-3954555)
chr4 (23-236)||(3809990-3810203)
chr4 (27-237)||(3986973-3987183)
chr4 (25-237)||(4218619-4218831)
chr4 (122-237)||(3817657-3817772)
chr4 (122-237)||(3919692-3919807)
chr4 (122-237)||(3932916-3933031)
chr4 (182-237)||(3963212-3963267)
[»] chr5 (1 HSPs)
chr5 (17-232)||(13397918-13398133)
[»] scaffold1360 (1 HSPs)
scaffold1360 (181-237)||(1911-1967)
[»] chr8 (2 HSPs)
chr8 (182-233)||(7069135-7069186)
chr8 (182-237)||(7075641-7075696)


Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 4025194 - 4025414
Alignment:
Q  17 aataaaactagacaacccatttggtgaatcgattttcacatcttctgctaatagtctagaaaaaagtttttctttcaaaaatgttattccatgtcttcct 116  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4025194 aatataactagacaacccatttggtgaatcgattttcacatcttctgctaatagtctagaaaaaagtttttctttcaaaaatgttattccatgtcttcct 4025293  T
Q  117 aattcttcacttacctttgctaaaaaacaacaaccttcatattcagagcaattttgtttaaaaatttcttcggcaatagttgtcttgccaatacctccca 216  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4025294 aattcttcacttacctttgccaaaaaacaacaaccttcatattcagagcaattttgtttaaaaatttcttcggcaatagttgtcttgccaatacctccca 4025393  T
Q  217 taccccaaattccaataacac 237  Q
    |||||||||||||||||||||    
T  4025394 taccccaaattccaataacac 4025414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 25 - 237
Target Start/End: Original strand, 4009972 - 4010184
Alignment:
Q  25 tagacaacccatttggtgaatcgattttcacatcttctgctaatagtctagaaaaaagtttttctttcaaaaatgttattccatgtcttcctaattcttc 124  Q
    |||||||||||||||| |||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||  ||    
T  4009972 tagacaacccatttggcgaacggattttcacatcttctgctaatagtgtagaaaaaagtttttctttcaaaaatgttcttccatgtcttcctaattgctc 4010071  T
Q  125 acttacctttgctaaaaaacaacaaccttcatattcagagcaattttgtttaaaaatttcttcggcaatagttgtcttgccaatacctcccataccccaa 224  Q
     ||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||| |||||| ||||||    
T  4010072 gcttaccttttccaaaaaacaacaaccttcatattcagagcaattttggttaaaaatttctcctgcaatagttgtcttgccaatacttcccatgccccaa 4010171  T
Q  225 attccaataacac 237  Q
    |||||||| ||||    
T  4010172 attccaatgacac 4010184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 25 - 237
Target Start/End: Original strand, 4002275 - 4002487
Alignment:
Q  25 tagacaacccatttggtgaatcgattttcacatcttctgctaatagtctagaaaaaagtttttctttcaaaaatgttattccatgtcttcctaattcttc 124  Q
    |||||| ||||||||||||||  |||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||| |||||| |||||||    
T  4002275 tagacagcccatttggtgaattaattttcacatcttctgctaatagtgtagaaaaaagcttttcttttaaaaatgttattccatgccttcctgattcttc 4002374  T
Q  125 acttacctttgctaaaaaacaacaaccttcatattcagagcaattttgtttaaaaatttcttcggcaatagttgtcttgccaatacctcccataccccaa 224  Q
    |||||||||| | ||||||||| |||||||||||||||||||| || | ||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  4002375 acttaccttttccaaaaaacaaaaaccttcatattcagagcaacttcggttaaaaacttcttcagcaatagttgtcttgccaatacctcccataccccaa 4002474  T
Q  225 attccaataacac 237  Q
    |||||||| ||||    
T  4002475 attccaatgacac 4002487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 25 - 237
Target Start/End: Original strand, 3801562 - 3801774
Alignment:
Q  25 tagacaacccatttggtgaatcgattttcacatcttctgctaatagtctagaaaaaagtttttctttcaaaaatgttattccatgtcttcctaattcttc 124  Q
    |||||||||||||||||||||||||||||||||||||   ||||||  |||||||||| ||||||||  ||| |||||||||| | |||||||||||       
T  3801562 tagacaacccatttggtgaatcgattttcacatcttcatttaataggttagaaaaaagcttttctttttaaattgttattccacgccttcctaattccaa 3801661  T
Q  125 acttacctttgctaaaaaacaacaaccttcatattcagagcaattttgtttaaaaatttcttcggcaatagttgtcttgccaatacctcccataccccaa 224  Q
    ||| || ||||  | |||||||||||| ||||||||| ||| |||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||||    
T  3801662 actcacatttgacataaaacaacaaccatcatattcaaagcgattttggttaaatatttcttctgcaatagttgtcttgccaataccgcccataccccaa 3801761  T
Q  225 attccaataacac 237  Q
    |||||||||||||    
T  3801762 attccaataacac 3801774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 25 - 237
Target Start/End: Complemental strand, 3954555 - 3954360
Alignment:
Q  25 tagacaacccatttggtgaatcgattttcacatcttctgctaatagtctagaaaaaagtttttctttcaaaaatgttattccatgtcttcctaattcttc 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| | |||                 | || ||||||||||| ||    
T  3954555 tagacaacccatttggtgaatcgattttcacatcttctgctaatagtgttgaaaaaagctgttc-----------------cgtgccttcctaattcgtc 3954473  T
Q  125 acttacctttgctaaaaaacaacaaccttcatattcagagcaattttgtttaaaaatttcttcggcaatagttgtcttgccaatacctcccataccccaa 224  Q
    ||| |||||||| |||||||||||||||||||||||||||||| || | ||| ||| |||||| ||||||||||||||||||||||||||||||||||||    
T  3954472 actcacctttgccaaaaaacaacaaccttcatattcagagcaacttcggttataaacttcttcagcaatagttgtcttgccaatacctcccataccccaa 3954373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 23 - 236
Target Start/End: Original strand, 3809990 - 3810203
Alignment:
Q  23 actagacaacccatttggtgaatcgattttcacatcttctgctaatagtctagaaaaaagtttttctttcaaaaatgttattccatgtcttcctaattct 122  Q
    ||||| ||||| |||||||| ||| ||||||||||||||||| |||||| ||||||||||||| | ||| ||| |    ||||||||||||  ||| |||    
T  3809990 actaggcaaccaatttggtgtatcaattttcacatcttctgccaatagtttagaaaaaagtttattttttaaagaatccattccatgtcttgttaactct 3810089  T
Q  123 tcacttacctttgctaaaaaacaacaaccttcatattcagagcaattttgtttaaaaatttcttcggcaatagttgtcttgccaatacctcccatacccc 222  Q
    |||||||||||| | || ||||||||||| ||||||||||| ||| |||| | ||| | |||||  ||||||||||||||||||||||| ||||||||||    
T  3810090 tcacttaccttttccaagaaacaacaaccatcatattcagaacaaatttggtcaaataattcttttgcaatagttgtcttgccaataccacccatacccc 3810189  T
Q  223 aaattccaataaca 236  Q
    ||||||| ||||||    
T  3810190 aaattccgataaca 3810203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 3986973 - 3987183
Alignment:
Q  27 gacaacccatttggtgaatcgattttcacatcttctgctaatagtctagaaaaaagtttttctttcaaaaatgttattccatgtcttcctaattcttcac 126  Q
    ||||||| |||||||| ||| |||||||||||||| || |||| | ||| ||||||  ||||||| ||| ||  ||||||||||  |  ||| | |||||    
T  3986973 gacaacctatttggtgtatcaattttcacatcttcggccaatattttagtaaaaagggtttcttttaaagattctattccatgtaattttaacttttcac 3987072  T
Q  127 ttacctttgctaaaaaacaacaaccttcatattcagagcaattttgtttaaaaatttcttcggcaatagttgtcttgccaatacctcccataccccaaat 226  Q
    | |||||||| |||||||||||||| ||||||||||||| |||||| |||||||||||||| |||||||||||||||||||| ||   ||||||||||||    
T  3987073 tcacctttgccaaaaaacaacaaccatcatattcagagcgattttggttaaaaatttcttctgcaatagttgtcttgccaatgccaggcataccccaaat 3987172  T
Q  227 tccaataacac 237  Q
    |||||| ||||    
T  3987173 tccaatcacac 3987183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 25 - 237
Target Start/End: Original strand, 4218619 - 4218831
Alignment:
Q  25 tagacaacccatttggtgaatcgattttcacatcttctgctaatagtctagaaaaaagtttttctttcaaaaatgttattccatgtcttcctaattcttc 124  Q
    ||||||||||||||| |||||||||||||||||||||   ||||||  ||||||||||  ||||||| ||||||||||||||| | |||  |||| |       
T  4218619 tagacaacccatttgatgaatcgattttcacatcttcatttaataggttagaaaaaagcatttcttttaaaaatgttattccacgactttgtaatcccaa 4218718  T
Q  125 acttacctttgctaaaaaacaacaaccttcatattcagagcaattttgtttaaaaatttcttcggcaatagttgtcttgccaatacctcccataccccaa 224  Q
    ||| || ||||  | |||||||||||| ||||||||||| ||| |||| | ||| | |||||  ||||||||||||||||||||||| ||||||||||||    
T  4218719 actcacatttgacataaaacaacaaccatcatattcagaacaaatttggtcaaataattcttttgcaatagttgtcttgccaataccgcccataccccaa 4218818  T
Q  225 attccaataacac 237  Q
    |||||||||||||    
T  4218819 attccaataacac 4218831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 122 - 237
Target Start/End: Original strand, 3817657 - 3817772
Alignment:
Q  122 ttcacttacctttgctaaaaaacaacaaccttcatattcagagcaattttgtttaaaaatttcttcggcaatagttgtcttgccaatacctcccataccc 221  Q
    |||||| |||||| | || ||||||||||| ||||| || || | ||||||  |||| |||||||| ||||||||||||||||||||||| ||||| |||    
T  3817657 ttcactgaccttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgccaataccgcccatgccc 3817756  T
Q  222 caaattccaataacac 237  Q
    ||||||||||||||||    
T  3817757 caaattccaataacac 3817772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 122 - 237
Target Start/End: Complemental strand, 3919807 - 3919692
Alignment:
Q  122 ttcacttacctttgctaaaaaacaacaaccttcatattcagagcaattttgtttaaaaatttcttcggcaatagttgtcttgccaatacctcccataccc 221  Q
    |||||| |||||| | || ||||||||||| ||||| || || | ||||||  |||| |||||||| ||||||||||||||||||||||| ||||| |||    
T  3919807 ttcactgaccttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgccaataccgcccatgccc 3919708  T
Q  222 caaattccaataacac 237  Q
    ||||||||||||||||    
T  3919707 caaattccaataacac 3919692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 122 - 237
Target Start/End: Complemental strand, 3933031 - 3932916
Alignment:
Q  122 ttcacttacctttgctaaaaaacaacaaccttcatattcagagcaattttgtttaaaaatttcttcggcaatagttgtcttgccaatacctcccataccc 221  Q
    |||||| |||||| | || ||||||||||| ||||| || || | ||||||  |||| |||||||| ||||||||||||||||||||||| ||||| |||    
T  3933031 ttcactgaccttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgccaataccgcccatgccc 3932932  T
Q  222 caaattccaataacac 237  Q
    ||||||||||||||||    
T  3932931 caaattccaataacac 3932916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 3963267 - 3963212
Alignment:
Q  182 ttcttcggcaatagttgtcttgccaatacctcccataccccaaattccaataacac 237  Q
    |||||| ||||  ||||||||||||||||| |||||||||||||| |||| |||||    
T  3963267 ttcttctgcaagggttgtcttgccaataccacccataccccaaatcccaacaacac 3963212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 13397918 - 13398133
Alignment:
Q  17 aataaaactagacaacccatttggtgaatcgattttcacatcttctgctaatagtctagaaaaaagtttttctttcaaaaatgttattccatgtcttcct 116  Q
    |||| |||||| ||||||||||| |||||||||||| |||||||||||||||||| |||||| ||| |||||||| ||||| | ||||||||| ||||||    
T  13397918 aatataactaggcaacccatttgatgaatcgatttttacatcttctgctaatagtgtagaaacaagcttttcttttaaaaacgctattccatgccttcct 13398017  T
Q  117 aattcttcacttacctttgctaaaaaacaacaaccttcatattcagagcaattttgtttaaaaatttcttcggcaatagttgtcttgccaatacctccca 216  Q
    ||||||||||| |||||||| ||||||||||| |||||||||||||| ||| |||| ||||||||||||||||||||||||||||| |||||||||||||    
T  13398018 aattcttcactcacctttgccaaaaaacaacatccttcatattcagaacaaatttgattaaaaatttcttcggcaatagttgtctttccaatacctccca 13398117  T
Q  217 taccccaaattccaat 232  Q
    |||||||||| |||||    
T  13398118 taccccaaataccaat 13398133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1360 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold1360
Description:

Target: scaffold1360; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 1967 - 1911
Alignment:
Q  181 tttcttcggcaatagttgtcttgccaatacctcccataccccaaattccaataacac 237  Q
    ||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  1967 tttcttctgcaatagttgtcttgccaataccgcccatgccccaaattccaataacac 1911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 233
Target Start/End: Original strand, 7069135 - 7069186
Alignment:
Q  182 ttcttcggcaatagttgtcttgccaatacctcccataccccaaattccaata 233  Q
    |||||| |||||||||||||| |||||||| | |||||||||||||||||||    
T  7069135 ttcttctgcaatagttgtctttccaataccactcataccccaaattccaata 7069186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 237
Target Start/End: Original strand, 7075641 - 7075696
Alignment:
Q  182 ttcttcggcaatagttgtcttgccaatacctcccataccccaaattccaataacac 237  Q
    |||||| ||||||||||| || |||||||||  ||||||||||||||||| |||||    
T  7075641 ttcttcagcaatagttgttttaccaatacctggcataccccaaattccaagaacac 7075696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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