View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9839A_low_322 (Length: 247)

Name: NF9839A_low_322
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9839A_low_322
NF9839A_low_322
[»] chr8 (4 HSPs)
chr8 (18-164)||(9107872-9108018)
chr8 (147-185)||(34048998-34049036)
chr8 (148-185)||(15078535-15078572)
chr8 (148-185)||(15167704-15167741)
[»] chr6 (3 HSPs)
chr6 (25-166)||(27994347-27994489)
chr6 (136-185)||(2477859-2477908)
chr6 (149-185)||(4036860-4036896)
[»] chr5 (6 HSPs)
chr5 (22-136)||(36869396-36869510)
chr5 (147-185)||(2024928-2024966)
chr5 (147-185)||(15639232-15639270)
chr5 (147-185)||(34425681-34425719)
chr5 (136-185)||(2411867-2411916)
chr5 (150-186)||(11242609-11242645)
[»] chr7 (7 HSPs)
chr7 (22-125)||(36903125-36903228)
chr7 (147-185)||(26917973-26918011)
chr7 (136-185)||(7398230-7398278)
chr7 (153-185)||(9021960-9021992)
chr7 (141-185)||(36903582-36903626)
chr7 (150-186)||(38971182-38971218)
chr7 (201-237)||(47115694-47115730)
[»] scaffold0227 (1 HSPs)
scaffold0227 (22-142)||(15748-15867)
[»] chr4 (7 HSPs)
chr4 (22-174)||(24613827-24613974)
chr4 (75-143)||(39655341-39655409)
chr4 (136-185)||(27111815-27111863)
chr4 (147-178)||(36363157-36363188)
chr4 (147-177)||(15734883-15734913)
chr4 (147-187)||(40217005-40217045)
chr4 (147-186)||(52468066-52468106)
[»] chr1 (3 HSPs)
chr1 (147-185)||(39135014-39135052)
chr1 (149-185)||(10926240-10926276)
chr1 (149-185)||(50146112-50146148)
[»] chr3 (1 HSPs)
chr3 (151-185)||(49392951-49392985)
[»] chr2 (3 HSPs)
chr2 (147-185)||(11952897-11952935)
chr2 (147-176)||(37622614-37622643)
chr2 (148-185)||(38400574-38400611)
[»] scaffold1320 (1 HSPs)
scaffold1320 (148-185)||(1131-1168)
[»] scaffold0007 (1 HSPs)
scaffold0007 (18-50)||(231064-231096)


Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 9108018 - 9107872
Alignment:
Q  18 atcagggaagaagaaaagggaagtctgatggaggagtggtggtgatgtaacacgtcgtatgagaatcagaagagagaaagagaataaggaaagaaacaca 117  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9108018 atcagggaagaaggaaagggaagtctgatggaggagtggtggtgatgtaacacgtcgtatgagaatcagaagagagaaagagaataaggaaagaaacaca 9107919  T
Q  118 ggtagtatcagagttctcataaggatttgttttagtggggtagtact 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  9107918 ggtagtatcagagttctcataaggatttgttttagtggggtagtact 9107872  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 34048998 - 34049036
Alignment:
Q  147 ttttagtggggtagtacttagtagtactactgggctata 185  Q
    ||||||| ||||||||||||||||| |||||||||||||    
T  34048998 ttttagtagggtagtacttagtagttctactgggctata 34049036  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 15078572 - 15078535
Alignment:
Q  148 tttagtggggtagtacttagtagtactactgggctata 185  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  15078572 tttagtggggtagtacttagtagtaccactgagctata 15078535  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 15167704 - 15167741
Alignment:
Q  148 tttagtggggtagtacttagtagtactactgggctata 185  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  15167704 tttagtggggaagtacttagtagtactactgagctata 15167741  T

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Target: chr6 (Bit Score: 87; Significance: 8e-42; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 25 - 166
Target Start/End: Complemental strand, 27994489 - 27994347
Alignment:
Q  25 aagaagaaaagggaagtctgatggaggagtggtggtgatgtaacacgtcgtatgagaatcagaagagagaaagagaataaggaaagaaacacaggtagta 124  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||| | |  ||    
T  27994489 aagaagaaaagggaagtatgatggaggagtggtggttatgtaacacgtcgtatgagtatcataagagagaaagagaataaggaaagaaacacggatgata 27994390  T
Q  125 tcagagttctcataag-gatttgttttagtggggtagtactta 166  Q
    ||||||||||||||||  |||| ||| ||||| ||||||||||    
T  27994389 tcagagttctcataagaaatttttttaagtggagtagtactta 27994347  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 2477859 - 2477908
Alignment:
Q  136 ataaggatttgttttagtggggtagtacttagtagtactactgggctata 185  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  2477859 ataaggattttttttaatggggtagtacttagtagtactactgggctata 2477908  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 4036896 - 4036860
Alignment:
Q  149 ttagtggggtagtacttagtagtactactgggctata 185  Q
    |||||||| ||||||||||||||||||||||||||||    
T  4036896 ttagtgggatagtacttagtagtactactgggctata 4036860  T

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Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 36869396 - 36869510
Alignment:
Q  22 gggaagaagaaaagggaagtctgatggaggagtggtggtgatgtaacacgtcgtatgagaatcagaagagagaaagagaataaggaaagaaacacaggta 121  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||| |||||||| ||| |||||||||||||||||  ||     
T  36869396 gggaagaagaaaagggaagtctgatggatgagtggtggtgatataacacgtcgtatgagtatcaaaagagagacagacaataaggaaagaaacacgagtg 36869495  T
Q  122 gtatcagagttctca 136  Q
    |||||||||||||||    
T  36869496 gtatcagagttctca 36869510  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 2024928 - 2024966
Alignment:
Q  147 ttttagtggggtagtacttagtagtactactgggctata 185  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2024928 ttttagtggggtagtacttagtagtactactgggctata 2024966  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 15639270 - 15639232
Alignment:
Q  147 ttttagtggggtagtacttagtagtactactgggctata 185  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  15639270 ttttagtggggtagtacttagtagtactactggactata 15639232  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 34425719 - 34425681
Alignment:
Q  147 ttttagtggggtagtacttagtagtactactgggctata 185  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  34425719 ttttagtggggtagtacttagtaatactactgggctata 34425681  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 185
Target Start/End: Complemental strand, 2411916 - 2411867
Alignment:
Q  136 ataaggatttgttttagtggggtagtacttagtagtactactgggctata 185  Q
    |||| ||||| |||||||||||||||||||||||| |||| ||| |||||    
T  2411916 ataatgattttttttagtggggtagtacttagtagcactattggactata 2411867  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 11242609 - 11242645
Alignment:
Q  150 tagtggggtagtacttagtagtactactgggctatat 186  Q
    |||||||||||||||||| |||||||||||| |||||    
T  11242609 tagtggggtagtacttagcagtactactgggttatat 11242645  T

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Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 125
Target Start/End: Original strand, 36903125 - 36903228
Alignment:
Q  22 gggaagaagaaaagggaagtctgatggaggagtggtggtgatgtaacacgtcgtatgagaatcagaagagagaaagagaataaggaaagaaacacaggta 121  Q
    |||||||||||||| |||||  | ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||| |||     
T  36903125 gggaagaagaaaagagaagttcggtggaggagtggtggtgatgtaacacgtcgtatgcgtatcagaagagagaaagagaataacgaaagaaacacgggtg 36903224  T
Q  122 gtat 125  Q
    ||||    
T  36903225 gtat 36903228  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 26917973 - 26918011
Alignment:
Q  147 ttttagtggggtagtacttagtagtactactgggctata 185  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  26917973 ttttagtggggtagtacttagtagtactactgagctata 26918011  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 185
Target Start/End: Complemental strand, 7398278 - 7398230
Alignment:
Q  136 ataaggatttgttttagtggggtagtacttagtagtactactgggctata 185  Q
    ||||| |||| |||||| ||||||||||||||||||||||||||||||||    
T  7398278 ataagaattttttttag-ggggtagtacttagtagtactactgggctata 7398230  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 9021960 - 9021992
Alignment:
Q  153 tggggtagtacttagtagtactactgggctata 185  Q
    |||||||||||||||||||||||||||||||||    
T  9021960 tggggtagtacttagtagtactactgggctata 9021992  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 36903582 - 36903626
Alignment:
Q  141 gatttgttttagtggggtagtacttagtagtactactgggctata 185  Q
    ||||| ||||||| ||||||||||||||||||||||||| |||||    
T  36903582 gatttattttagtagggtagtacttagtagtactactggactata 36903626  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 38971218 - 38971182
Alignment:
Q  150 tagtggggtagtacttagtagtactactgggctatat 186  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  38971218 tagtgaggtagtacttagtagtattactgggctatat 38971182  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 47115730 - 47115694
Alignment:
Q  201 cataccttaaggaggcccaaatccattgagctgtttg 237  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  47115730 cataccttaaggaggtccaactccattgagctgtttg 47115694  T

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Target: scaffold0227 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 15867 - 15748
Alignment:
Q  22 gggaagaagaaaagggaagtctgatggaggagtggtggtgatgtaacacgtcgtatgagaatcagaagagagaaagagaataaggaaagaaacacaggta 121  Q
    ||||| ||||||| ||||||||||||||||||||||| ||||| ||| | | ||| ||| ||||||||||||||||||||||||||||||||||  |||     
T  15867 gggaaaaagaaaaaggaagtctgatggaggagtggtgatgatgcaacgcatggtacgagtatcagaagagagaaagagaataaggaaagaaaca-tggtg 15769  T
Q  122 gtatcagagttctcataagga 142  Q
    |||| ||||||||||||||||    
T  15768 gtattagagttctcataagga 15748  T

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Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 174
Target Start/End: Complemental strand, 24613974 - 24613827
Alignment:
Q  22 gggaagaagaaaagggaagtctgatggaggagtggtggtgatgtaacacgtcgtatgagaatcagaagagagaaagagaataaggaaagaaacacaggta 121  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||  |        || ||||||||||||||||||||||||||||||||||||  |     
T  24613974 gggaagaagaaaagggaagtccgatggaggagtggtggtggtgtaatgc--------agtatcagaagagagaaagagaataaggaaagaaacaca--tg 24613885  T
Q  122 gtatcagagttctcataagg-----atttgttttagtggggtagtacttagtagtact 174  Q
    ||||||||||||||| || |     |||| ||||||||||||||||||||||||||||    
T  24613884 gtatcagagttctcaaaaagaatttatttattttagtggggtagtacttagtagtact 24613827  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 143
Target Start/End: Original strand, 39655341 - 39655409
Alignment:
Q  75 tatgagaatcagaagagagaaagagaataaggaaagaaacacaggtagtatcagagttctcataaggat 143  Q
    |||||| || |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  39655341 tatgagtattagaagagagaaagagaataaggaaagaaacacgggtggtatcagagttctcataaggat 39655409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 185
Target Start/End: Complemental strand, 27111863 - 27111815
Alignment:
Q  136 ataaggatttgttttagtggggtagtacttagtagtactactgggctata 185  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  27111863 ataaggattt-ttttaatggggtagtacttagtagtactactgggctata 27111815  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 178
Target Start/End: Original strand, 36363157 - 36363188
Alignment:
Q  147 ttttagtggggtagtacttagtagtactactg 178  Q
    ||||||||||||||||||||||||||||||||    
T  36363157 ttttagtggggtagtacttagtagtactactg 36363188  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 177
Target Start/End: Complemental strand, 15734913 - 15734883
Alignment:
Q  147 ttttagtggggtagtacttagtagtactact 177  Q
    |||||||||||||||||||||||||||||||    
T  15734913 ttttagtggggtagtacttagtagtactact 15734883  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 40217045 - 40217005
Alignment:
Q  147 ttttagtggggtagtacttagtagtactactgggctatata 187  Q
    |||||||||||||||| ||||||||||||||  ||||||||    
T  40217045 ttttagtggggtagtatttagtagtactactaagctatata 40217005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 186
Target Start/End: Complemental strand, 52468106 - 52468066
Alignment:
Q  147 ttttagtggggt-agtacttagtagtactactgggctatat 186  Q
    |||||||||||| ||||||||||||||||||||| ||||||    
T  52468106 ttttagtggggttagtacttagtagtactactggactatat 52468066  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 39135014 - 39135052
Alignment:
Q  147 ttttagtggggtagtacttagtagtactactgggctata 185  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  39135014 ttttactggggtagtacttagtagtactactgggctata 39135052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 10926240 - 10926276
Alignment:
Q  149 ttagtggggtagtacttagtagtactactgggctata 185  Q
    |||||||||||||||||||||||| ||||||||||||    
T  10926240 ttagtggggtagtacttagtagtaatactgggctata 10926276  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 50146148 - 50146112
Alignment:
Q  149 ttagtggggtagtacttagtagtactactgggctata 185  Q
    ||||||||||||||||||||||||| |||||||||||    
T  50146148 ttagtggggtagtacttagtagtaccactgggctata 50146112  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 49392985 - 49392951
Alignment:
Q  151 agtggggtagtacttagtagtactactgggctata 185  Q
    ||||||| |||||||||||||||||||||||||||    
T  49392985 agtggggcagtacttagtagtactactgggctata 49392951  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 11952897 - 11952935
Alignment:
Q  147 ttttagtggggtagtacttagtagtactactgggctata 185  Q
    ||||||||| |||||||||||||||||||| ||||||||    
T  11952897 ttttagtggagtagtacttagtagtactacagggctata 11952935  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 176
Target Start/End: Original strand, 37622614 - 37622643
Alignment:
Q  147 ttttagtggggtagtacttagtagtactac 176  Q
    ||||||||||||||||||||||||||||||    
T  37622614 ttttagtggggtagtacttagtagtactac 37622643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 38400611 - 38400574
Alignment:
Q  148 tttagtggggtagtacttagtagtactactgggctata 185  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  38400611 tttagtggggtagtacttagtagtactattggactata 38400574  T

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Target: scaffold1320 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 1168 - 1131
Alignment:
Q  148 tttagtggggtagtacttagtagtactactgggctata 185  Q
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T  1168 tttagtggggtagtacttagtagtaccactgagctata 1131  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 231064 - 231096
Alignment:
Q  18 atcagggaagaagaaaagggaagtctgatggag 50  Q
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T  231064 atcagggaagaagaaaaggaaagtctgatggag 231096  T

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