View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_323 (Length: 247)
Name: NF9839A_low_323
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_323 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 53219684 - 53219453
Alignment:
| Q |
1 |
tttcaaattcctccttacatgattatgcgaattctagattgagggaacatgtccagggagctgacaacaatcctcttctcatatttcctgagggaacttg |
100 |
Q |
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| T |
53219684 |
tttcaaattcctccttacatgattatgcgtattctagattgagggaacatgtccagggagctgacaacaatcctcttctcatatttcctgagggaacttg |
53219585 |
T |
|
| Q |
101 |
tgtaaataatcactatacagtcatgttcaagaaggtttgtgaatcatttgcaactacagtcatgtaaaatgttatcatattcgtgcagtagtttttcttt |
200 |
Q |
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| T |
53219584 |
tgtaaataatcactatacagtcatgttcaagaaggtttgtgaatcatttgcaactacagtcatgtaaaatgttatcatatttgtgcagtagcttttcttt |
53219485 |
T |
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| Q |
201 |
tgttgttctgttattttgcactcattgatgtc |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
53219484 |
tgttgttctgttattttgcactcattgatgtc |
53219453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 15411591 - 15411350
Alignment:
| Q |
1 |
tttcaaattcctcc----ttacatgattatgcgaattctagattgagggaacatgtccagggagctgacaacaatcctcttctcatatttcctgagggaa |
96 |
Q |
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|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
15411591 |
tttcaaattcctccttacttacatgattatgcatattctagattgagggaacatgtccagggagctgacaataatcctcttctcatatttcctgagggaa |
15411492 |
T |
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| Q |
97 |
cttgtgtaaataatcactatacagtcatgttcaagaaggtttgtgaatcatttgcaactacagtcatgtaaa---------atgttatcatattcgtgca |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||| ||||||||||||| ||||| |
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| T |
15411491 |
cttgtgtaaataatcactatacagtcatgttcaagaaggtatttgaatcatttgcaattacagtcatgtaaaatgcagtttatgttatcatattagtgca |
15411392 |
T |
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| Q |
188 |
gtagtttttcttttgttgttctgttattttgcactcattgat |
229 |
Q |
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| T |
15411391 |
atagcttttctttttttgttctgttattttgcacccattgat |
15411350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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