View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_325 (Length: 246)
Name: NF9839A_low_325
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_325 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 15 - 240
Target Start/End: Complemental strand, 5173130 - 5172905
Alignment:
| Q |
15 |
tatcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtctttgtctaggttgcaatttctaagaatgagtgacttcaattgaaattta |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5173130 |
tatcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagggacttcaattgaaattta |
5173031 |
T |
|
| Q |
115 |
ggaaaccattttgttttttcagtttcaatgtgtactccggtactattgttcggtgaaatatatagatgttgaagattggagtgattagccaaggtggtca |
214 |
Q |
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|||||||| ||||||||||||||||||||||||||||| || || || |||| |||||||| |||||| ||||||||||||||||||||||| || | | |
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| T |
5173030 |
ggaaaccactttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatgtagatgctgaagattggagtgattagccaaaatgataa |
5172931 |
T |
|
| Q |
215 |
atgaaaatgatccttgcatgtaattt |
240 |
Q |
| |
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||||||||||||||||||||||||| |
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|
| T |
5172930 |
gtgaaaatgatccttgcatgtaattt |
5172905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 5160213 - 5159986
Alignment:
| Q |
16 |
atcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtctttgtctaggttgcaatttctaagaatgagtgacttcaattgaaatttag |
115 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5160213 |
atcaaattgtattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttag |
5160114 |
T |
|
| Q |
116 |
gaaaccattttgttttttcagtttcaatgtgtactccggtactattgttcggtgaaatatatagatgttgaagattggagtgattagccaaggtggtcaa |
215 |
Q |
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||||||| |||||||||||||||||||||| |||||| || | || || | ||||||||||||| | ||||||||| ||||||||||| ||| |||| |
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| T |
5160113 |
gaaaccactttgttttttcagtttcaatgtctactccaatattgttttttgatgaaatatatagaacctcaagattggaatgattagccaaagtgctcaa |
5160014 |
T |
|
| Q |
216 |
tgaaaatgatccttgcatgtaatttcca |
243 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
5160013 |
tgaaaatgatccttgcatgtaatttcca |
5159986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 15 - 240
Target Start/End: Original strand, 4842395 - 4842620
Alignment:
| Q |
15 |
tatcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtctttgtctaggttgcaatttctaagaatgagtgacttcaattgaaattta |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4842395 |
tatcaaattatattgataagaaagaaaagtaggaatgacacttcctttcttcatgtttaggttgcaatttctaagaatgagggacttcaattgaaattta |
4842494 |
T |
|
| Q |
115 |
ggaaaccattttgttttttcagtttcaatgtgtactccggtactattgttcggtgaaatatatagatgttgaagattggagtgattagccaaggtggtca |
214 |
Q |
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| T |
4842495 |
ggaaaccactttgttttttcagtttcaatgtgtactccaatactgtttttagatgaaatatatagatgctgaagattggagtgattagccaaattgataa |
4842594 |
T |
|
| Q |
215 |
atgaaaatgatccttgcatgtaattt |
240 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
4842595 |
gtgaaaatgatccttgcatgtaattt |
4842620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 13 - 243
Target Start/End: Original strand, 4856870 - 4857097
Alignment:
| Q |
13 |
aatatcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtctttgtctaggttgcaatttctaagaatgagtgacttcaattgaaatt |
112 |
Q |
| |
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|||| ||||||||||||||| |||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
4856870 |
aataccaaattatattgatatgaaagaaaagtaggaatgacacttccttcgtccatgtttaggttgcaatttctaagaatgagtgtcttcaattgaaatt |
4856969 |
T |
|
| Q |
113 |
taggaaaccattttgttttttcagtttcaatgtgtactccggtactattgttcggtgaaatatatagatgttgaagattggagtgattagccaaggtggt |
212 |
Q |
| |
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| |||||||| ||||| ||||||||||||||| | ||||| ||| || | |||||||||||||||||| |||||||| |||||||||||||| ||||| |
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| T |
4856970 |
tgggaaaccactttgtcttttcagtttcaatgagaactcc---actgttttccggtgaaatatatagatgctgaagatttgagtgattagccaaagtggt |
4857066 |
T |
|
| Q |
213 |
caatgaaaatgatccttgcatgtaatttcca |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
4857067 |
caatgaaaatgatccttgcatgtaatttcca |
4857097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 13 - 243
Target Start/End: Complemental strand, 5182461 - 5182234
Alignment:
| Q |
13 |
aatatcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtctttgtctaggttgcaatttctaagaatgagtgacttcaattgaaatt |
112 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |||||| || |||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
5182461 |
aatatcaaattatattgatatgaaagaaaagtaggaatgacacctcctttctccttgtttaggttgcaatttctaagaatgagtgtcttcaattgaaatt |
5182362 |
T |
|
| Q |
113 |
taggaaaccattttgttttttcagtttcaatgtgtactccggtactattgttcggtgaaatatatagatgttgaagattggagtgattagccaaggtggt |
212 |
Q |
| |
|
| |||||||| ||||| ||||||||||||||| | ||||| ||| || | |||||||||||||||||| |||||||| |||||||||||||| ||| | |
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| T |
5182361 |
tgggaaaccactttgtcttttcagtttcaatgagaactcc---actgttttccggtgaaatatatagatgctgaagatttgagtgattagccaaagtgct |
5182265 |
T |
|
| Q |
213 |
caatgaaaatgatccttgcatgtaatttcca |
243 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
5182264 |
caatgaaaatgatccttgcatgtaatttcca |
5182234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 5195853 - 5195628
Alignment:
| Q |
18 |
caaattatattgataagaaagaaaagtaggaatgacacttcctttgtctttgtctaggttgcaatttctaagaatgagtgacttcaattgaaatttagga |
117 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| ||| |||| ||||||||||||||||| ||| |||||||||||||||||||||||| |
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|
| T |
5195853 |
caaattatattgatatgaaagaaaagtaggaatgacacttccttcgtccttgtttaggttgcaatttctaacaataagtgacttcaattgaaatttagga |
5195754 |
T |
|
| Q |
118 |
aaccattttgttttttcagtttcaatgtgtactccggtactattgttcggtgaaatatatagatgttgaagattggagtgattagccaaggtggtcaatg |
217 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||| || | || || | ||||||||||||| | ||||||||| ||||||||||| ||| |||||| |
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|
| T |
5195753 |
aaccactttgttttttcagtttcaatgtctactccaatattgttttttgatgaaatatatagaacctcaagattggaatgattagccaaagtgctcaatg |
5195654 |
T |
|
| Q |
218 |
aaaatgatccttgcatgtaatttcca |
243 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
5195653 |
aaaatgatccttgcatgtaatttcca |
5195628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 13 - 246
Target Start/End: Complemental strand, 5214021 - 5213791
Alignment:
| Q |
13 |
aatatcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtctttgtctaggttgcaatttctaagaatgagtgacttcaattgaaatt |
112 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||| |||||||||||||| |
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|
| T |
5214021 |
aatatcaaactatattgatatgaaagaaaagtaggaatgacacttcctttgtccttgtttaagttgcaatttctaagaatgagtgtcttcaattgaaatt |
5213922 |
T |
|
| Q |
113 |
taggaaaccattttgttttttcagtttcaatgtgtactccggtactattgttcggtgaaatatatagatgttgaagattggagtgattagccaaggtggt |
212 |
Q |
| |
|
| || ||||| ||||| |||||||||||||||| | | || | || |||| | ||||||||||||||| || |||||||||||||||||||| ||| | |
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| T |
5213921 |
tgggtaaccactttgtcttttcagtttcaatgtttgcaccaatgct-ttgt--gatgaaatatatagatgctggagattggagtgattagccaaagtgct |
5213825 |
T |
|
| Q |
213 |
caatgaaaatgatccttgcatgtaatttccaaag |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
5213824 |
caatgaaaatgatccttgcatgtaatttccaaag |
5213791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 7142390 - 7142257
Alignment:
| Q |
18 |
caaattatattgataagaaagaaaagtaggaatgacacttcctttgtctttgtctaggttgcaatttctaagaatgagtgacttcaattgaaatttagga |
117 |
Q |
| |
|
|||||||| |||||| |||| |||| ||||||||||| |||||||||| ||| | ||||||||||| ||| | | |||| | | ||||||| ||||| |
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| T |
7142390 |
caaattatgttgatatgaaaaaaaactaggaatgacatttcctttgtccatgttttggttgcaatttttaaca-taagtgtatgtagttgaaatctagga |
7142292 |
T |
|
| Q |
118 |
aaccattttgttttttcagtttcaatgtgtactcc |
152 |
Q |
| |
|
||||| ||||| ||||||||||||| ||||||||| |
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|
| T |
7142291 |
aaccactttgtattttcagtttcaacgtgtactcc |
7142257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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