View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_327 (Length: 246)
Name: NF9839A_low_327
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_327 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 28250309 - 28250080
Alignment:
| Q |
17 |
gacatcagatcaaaacaacgaagccttctacagttaattatcaatctcttcccttcagagaaagcagcttttccaatcaacttcctttgctgcctcctcc |
116 |
Q |
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| T |
28250309 |
gacatcagatcaaaacaacgaagccttctagagttaattatcaatctcttcccttcggagaaagcagcttttccaatcaacttcctttgctgcctcctcc |
28250210 |
T |
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| Q |
117 |
gttgcgccatccacctccgcgcctccaccgtctgcaaaaccgaactcgagaaacgaatctcggcaatcctcgaacacgttaccgtcgacgacctcctcgt |
216 |
Q |
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| T |
28250209 |
gttgcgccatccacctccgcgcctccaccgtctgcaaaaccgaactcgagaaacgaatctcggcaatcctcgaacacgttaccgtcgacgacctcctcgt |
28250110 |
T |
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| Q |
217 |
gatgtcattctcctacgacggcgagaaact |
246 |
Q |
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| T |
28250109 |
gatgtcattctcctacgacggcgagaaact |
28250080 |
T |
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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 242
Target Start/End: Complemental strand, 32179846 - 32179665
Alignment:
| Q |
61 |
tctcttcccttcagagaaagcagcttttccaatcaacttcctttgctgcctcctccgttgcgccatccacctccgcgcctccaccgtctgcaaaaccgaa |
160 |
Q |
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| T |
32179846 |
tctctttccgtcggagaaagctgcttttccgatcaacttcctctgctgtcttctccgttgtgctatctacctacgcgcctcaagcgcgtgcaagcgcgaa |
32179747 |
T |
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| Q |
161 |
ctcgagaaacgaatctcggcaatcctcgaacacgttaccgtcgacgacctcctcgtgatgtcattctcctacgacggcgaga |
242 |
Q |
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| T |
32179746 |
ctcgagaagcgaatagctgaaattctggaacacgtaacagtgaacgatctcttggttctgtcattcacctacgacggcgaga |
32179665 |
T |
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