View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_331 (Length: 245)
Name: NF9839A_low_331
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_331 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 22205845 - 22205623
Alignment:
| Q |
8 |
ggctggtctattatcaaaaacctttgttctgatacaggtttgtctgtgtgccttgcatctgcagtgaaattcttttaattttttgcatgcttcccttttg |
107 |
Q |
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| T |
22205845 |
ggctggtctattatcaaaaacctttgttctgatacaggtttgtctctgtgccttgcttctgcagtgaaattcttttaattttttgcatgcttcccttttg |
22205746 |
T |
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| Q |
108 |
ttttatgtaataagttatgtttatattgaattcttgtcttaagactggtttgttattgtagggaattgggatatttcattacaaagaactgtccatgtct |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
22205745 |
ttttatgtaataagttatgtttatattgaattcttgtcttaagactggtttgttattgttgggaattgggaaatttcattacaaagaactgtccatgtct |
22205646 |
T |
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| Q |
208 |
agctgtctgtcatgcaactattt |
230 |
Q |
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|||||||||||||||||| |||| |
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| T |
22205645 |
agctgtctgtcatgcaaccattt |
22205623 |
T |
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