View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_333 (Length: 245)
Name: NF9839A_low_333
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_333 |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 46208919 - 46208690
Alignment:
| Q |
1 |
gagtatccgtgaatgaaatgaaattagaacaaaacgtcaaaataatagtaaatgttgtttcgatataaaaccctcagatcgaagaacgtgaatttcacat |
100 |
Q |
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| T |
46208919 |
gagtatccgtgaatgaaatgaaattagaacaaaacaacaa--taacaataaatgttgtttcgatctaaagccctcagatcgaagaacgtgaatttcacat |
46208822 |
T |
|
| Q |
101 |
tctcctccttaaccttctccttcttcgaccactttctcctttcatcccaattctcattcatctcctcaacaaacgccttcgtctccg----cgccacttc |
196 |
Q |
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|||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||| |||||||| |||||| |||||| ||||||| | |
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| T |
46208821 |
tctcctccttaaccttctccttcttcaacccctttctcctttcattccaattctcattcatctcttcaacaaatgccttcatctccgcgtccgccactac |
46208722 |
T |
|
| Q |
197 |
ttctgaagcgaaattcatgtccccttcccatg |
228 |
Q |
| |
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||| ||| |||||||||||| |||||||||| |
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| T |
46208721 |
ttccgaattgaaattcatgtcgccttcccatg |
46208690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 122 - 228
Target Start/End: Complemental strand, 48962832 - 48962726
Alignment:
| Q |
122 |
tcttcgaccactttctcctttcatcccaattctcattcatctcctcaacaaacgccttcgtctccgcgccacttcttctgaagcgaaattcatgtcccct |
221 |
Q |
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||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
48962832 |
tcttcgacccctttctcctttcattccaattctcattcatctcctcaacaaacgccttcgtctccgcgccacttcttctgaagcgaaattcatgtcacct |
48962733 |
T |
|
| Q |
222 |
tcccatg |
228 |
Q |
| |
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| T |
48962732 |
tcccatg |
48962726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 93 - 228
Target Start/End: Complemental strand, 17368244 - 17368105
Alignment:
| Q |
93 |
tttcacattctcctccttaaccttctccttcttcgaccactttctcctttcatcccaattctcattcatctcctcaacaaacgccttcgtctccg----c |
188 |
Q |
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||||||||||||||||| |||||||||||||||| ||| |||||||| |||| ||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
17368244 |
tttcacattctcctcctcaaccttctccttcttcaacccttttctcctctcattccaattctcattcatctcctccacaaacgccttcgtctccgcgtcc |
17368145 |
T |
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| Q |
189 |
gccacttcttctgaagcgaaattcatgtccccttcccatg |
228 |
Q |
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||||||||||| ||||||||||||| ||| |||||||||| |
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| T |
17368144 |
gccacttcttccgaagcgaaattcacgtctccttcccatg |
17368105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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